KEGG   PATHWAY: sgla00020
Entry
sgla00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella glacialimarina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sgla00020  Citrate cycle (TCA cycle)
sgla00020

Module
sgla_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sgla00020]
sgla_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sgla00020]
sgla_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sgla00020]
sgla_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sgla00020]
sgla_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sgla00020]
Other DBs
GO: 0006099
Organism
Shewanella glacialimarina [GN:sgla]
Gene
FJ709_08080  citrate synthase [KO:K01647] [EC:2.3.3.1]
FJ709_03675  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FJ709_01530  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FJ709_08235  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FJ709_12735  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
FJ709_08105  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FJ709_08110  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FJ709_01510  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FJ709_08120  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FJ709_08115  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FJ709_08095  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FJ709_08100  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FJ709_08085  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
FJ709_08090  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FJ709_17500  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
FJ709_17495  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
FJ709_17505  fumarate reductase cytochrome b subunit [KO:K25996]
FJ709_02680  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
FJ709_10325  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FJ709_08675  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
FJ709_03500  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FJ709_00490  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FJ709_01500  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FJ709_01505  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sgla00010  Glycolysis / Gluconeogenesis
sgla00053  Ascorbate and aldarate metabolism
sgla00061  Fatty acid biosynthesis
sgla00071  Fatty acid degradation
sgla00190  Oxidative phosphorylation
sgla00220  Arginine biosynthesis
sgla00250  Alanine, aspartate and glutamate metabolism
sgla00280  Valine, leucine and isoleucine degradation
sgla00350  Tyrosine metabolism
sgla00470  D-Amino acid metabolism
sgla00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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