KEGG   PATHWAY: sglc00020
Entry
sglc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingomonas glaciei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sglc00020  Citrate cycle (TCA cycle)
sglc00020

Module
sglc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sglc00020]
sglc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sglc00020]
sglc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sglc00020]
sglc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sglc00020]
sglc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sglc00020]
Other DBs
GO: 0006099
Organism
Sphingomonas glaciei [GN:sglc]
Gene
M1K48_05355  citrate synthase [KO:K01647] [EC:2.3.3.1]
M1K48_08780  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
M1K48_03020  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M1K48_12905  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
M1K48_01780  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
M1K48_12910  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
M1K48_12915  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M1K48_13435  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M1K48_05030  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
M1K48_05025  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
M1K48_12900  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
M1K48_10710  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M1K48_12170  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M1K48_12850  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M1K48_12180  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
M1K48_09205  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M1K48_12885  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M1K48_04950  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
M1K48_05790  transketolase [KO:K00163] [EC:1.2.4.1]
M1K48_04135  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
M1K48_04130  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
M1K48_13425  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sglc00010  Glycolysis / Gluconeogenesis
sglc00053  Ascorbate and aldarate metabolism
sglc00061  Fatty acid biosynthesis
sglc00071  Fatty acid degradation
sglc00190  Oxidative phosphorylation
sglc00220  Arginine biosynthesis
sglc00250  Alanine, aspartate and glutamate metabolism
sglc00280  Valine, leucine and isoleucine degradation
sglc00350  Tyrosine metabolism
sglc00470  D-Amino acid metabolism
sglc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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