KEGG   PATHWAY: sgm00020
Entry
sgm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces aurantiacus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sgm00020  Citrate cycle (TCA cycle)
sgm00020

Module
sgm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sgm00020]
sgm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sgm00020]
sgm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sgm00020]
sgm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sgm00020]
sgm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sgm00020]
Other DBs
GO: 0006099
Organism
Streptomyces aurantiacus [GN:sgm]
Gene
GCM10017557_36700  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
GCM10017557_53750  citrate synthase [KO:K01647] [EC:2.3.3.1]
GCM10017557_20750  citrate synthase [KO:K01647] [EC:2.3.3.1]
GCM10017557_20760  citrate synthase [KO:K01647] [EC:2.3.3.1]
GCM10017557_18490  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GCM10017557_75430  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
GCM10017557_26170  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
GCM10017557_60220  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GCM10017557_48700  oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GCM10017557_48690  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GCM10017557_30980  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
GCM10017557_13190  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
GCM10017557_30990  sucC1; succinate--CoA ligase [ADP-forming] subunit beta 1 [KO:K01903] [EC:6.2.1.5]
GCM10017557_13200  sucC2; succinate--CoA ligase [ADP-forming] subunit beta 2 [KO:K01903] [EC:6.2.1.5]
GCM10017557_28030  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GCM10017557_30320  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GCM10017557_08800  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GCM10017557_28040  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GCM10017557_30330  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GCM10017557_08790  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
GCM10017557_30300  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
GCM10017557_08810  succinate dehydrogenase [KO:K00241]
GCM10017557_30310  succinate dehydrogenase [KO:K00242]
GCM10017557_28530  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
GCM10017557_28540  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
GCM10017557_30840  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GCM10017557_29080  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
GCM10017557_57710  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
GCM10017557_60190  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
GCM10017557_60210  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sgm00010  Glycolysis / Gluconeogenesis
sgm00053  Ascorbate and aldarate metabolism
sgm00061  Fatty acid biosynthesis
sgm00071  Fatty acid degradation
sgm00190  Oxidative phosphorylation
sgm00220  Arginine biosynthesis
sgm00250  Alanine, aspartate and glutamate metabolism
sgm00280  Valine, leucine and isoleucine degradation
sgm00350  Tyrosine metabolism
sgm00470  D-Amino acid metabolism
sgm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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