KEGG   PATHWAY: sho00020
Entry
sho00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces hygroscopicus subsp. jinggangensis TL01
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sho00020  Citrate cycle (TCA cycle)
sho00020

Module
sho_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sho00020]
sho_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sho00020]
sho_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sho00020]
sho_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sho00020]
sho_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sho00020]
Other DBs
GO: 0006099
Organism
Streptomyces hygroscopicus subsp. jinggangensis TL01 [GN:sho]
Gene
SHJGH_6697  citrate synthase [KO:K01647] [EC:2.3.3.1]
SHJGH_6698  citrate synthase [KO:K01647] [EC:2.3.3.1]
SHJGH_4518  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
SHJGH_4003  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
SHJGH_6830  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SHJGH_7521  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SHJGH_6150  alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
SHJGH_0613  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SHJGH_2227  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SHJGH_3424  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SHJGH_6917  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SHJGH_5498  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SHJGH_5497  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SHJGH_5673  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SHJGH_7289  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SHJGH_5672  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SHJGH_7288  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SHJGH_5740  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SHJGH_5964  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SHJGH_7643  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SHJGH_5739  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SHJGH_5963  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SHJGH_7644  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SHJGH_5742  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
SHJGH_7642  cytochrome b subunit [KO:K00241]
SHJGH_5741  succinate dehydrogenase membrane subunit [KO:K00242]
SHJGH_5903  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
SHJGH_5902  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SHJGH_5712  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SHJGH_7997  putative pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SHJGH_5842  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
SHJGH_3427  2-oxoacid dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
SHJGH_3629  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
SHJGH_8522  pyruvate dehydrogenase E1 component,alpha subunit [KO:K00161] [EC:1.2.4.1]
SHJGH_8521  pyruvate dehydrogenase E1 component,beta subunit [KO:K00162] [EC:1.2.4.1]
SHJGH_2222  branched-chain alpha-keto acid dehydrogenase [KO:K00627] [EC:2.3.1.12]
SHJGH_8520  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
SHJGH_3425  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sho00010  Glycolysis / Gluconeogenesis
sho00053  Ascorbate and aldarate metabolism
sho00061  Fatty acid biosynthesis
sho00071  Fatty acid degradation
sho00190  Oxidative phosphorylation
sho00220  Arginine biosynthesis
sho00250  Alanine, aspartate and glutamate metabolism
sho00280  Valine, leucine and isoleucine degradation
sho00350  Tyrosine metabolism
sho00470  D-Amino acid metabolism
sho00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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