KEGG   PATHWAY: shum00020
Entry
shum00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Stella humosa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
shum00020  Citrate cycle (TCA cycle)
shum00020

Module
shum_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:shum00020]
shum_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:shum00020]
shum_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:shum00020]
shum_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:shum00020]
Other DBs
GO: 0006099
Organism
Stella humosa [GN:shum]
Gene
STHU_26570  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
STHU_09900  hypothetical protein [KO:K01647] [EC:2.3.3.1]
STHU_09910  citrate synthase [KO:K01647] [EC:2.3.3.1]
STHU_00460  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
STHU_23780  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
STHU_47960  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
STHU_47950  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
STHU_25780  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STHU_18190  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STHU_47940  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STHU_46670  ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
STHU_46660  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
STHU_47970  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
STHU_47980  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
STHU_50240  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STHU_50250  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
STHU_50220  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
STHU_50230  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
STHU_54760  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
STHU_36840  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
STHU_47990  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
STHU_27190  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
STHU_25750  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
STHU_25760  pdhB; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
STHU_25770  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
shum00010  Glycolysis / Gluconeogenesis
shum00053  Ascorbate and aldarate metabolism
shum00061  Fatty acid biosynthesis
shum00071  Fatty acid degradation
shum00190  Oxidative phosphorylation
shum00220  Arginine biosynthesis
shum00250  Alanine, aspartate and glutamate metabolism
shum00280  Valine, leucine and isoleucine degradation
shum00350  Tyrosine metabolism
shum00470  D-Amino acid metabolism
shum00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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