KEGG   PATHWAY: snem00010
Entry
snem00010                   Pathway                                
Name
Glycolysis / Gluconeogenesis - Serratia nematodiphila
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
snem00010  Glycolysis / Gluconeogenesis
snem00010

Module
snem_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:snem00010]
snem_M00002  Glycolysis, core module involving three-carbon compounds [PATH:snem00010]
snem_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:snem00010]
snem_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:snem00010]
Other DBs
GO: 0006096 0006094
Organism
Serratia nematodiphila [GN:snem]
Gene
NLX84_17715  glk; glucokinase [KO:K00845] [EC:2.7.1.2]
NLX84_22755  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
NLX84_24360  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
NLX84_01830  fbp; class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
NLX84_18440  fbaB; class I fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
NLX84_20580  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
NLX84_24350  tpiA; triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
NLX84_15885  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
NLX84_13820  gapA; glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
NLX84_20585  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
NLX84_06280  gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
NLX84_03085  gpmB; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB [KO:K15634] [EC:5.4.2.11]
NLX84_24425  gpmM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
NLX84_03655  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
NLX84_12285  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
NLX84_14015  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
NLX84_11155  pykF; pyruvate kinase PykF [KO:K00873] [EC:2.7.1.40]
NLX84_06575  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
NLX84_20900  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
NLX84_20895  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
NLX84_20890  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NLX84_24205  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NLX84_13110  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
NLX84_07720  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
NLX84_13680  adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase [KO:K04072] [EC:1.2.1.10 1.1.1.1]
NLX84_12155  adhP; alcohol dehydrogenase AdhP [KO:K13953] [EC:1.1.1.1]
NLX84_22580  NAD(P)-dependent alcohol dehydrogenase [KO:K13979] [EC:1.1.1.2]
NLX84_10900  cytochrome c [KO:K22474] [EC:1.1.5.5]
NLX84_12160  aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
NLX84_01300  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
NLX84_06290  galM; galactose-1-epimerase [KO:K01785] [EC:5.1.3.3]
NLX84_16100  agp; bifunctional glucose-1-phosphatase/inositol phosphatase [KO:K01085] [EC:3.1.3.10]
NLX84_24650  yihX; glucose-1-phosphatase [KO:K20866] [EC:3.1.3.10]
NLX84_05990  pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) [KO:K01835] [EC:5.4.2.2]
NLX84_13825  D-hexose-6-phosphate mutarotase [KO:K01792] [EC:5.1.3.15]
NLX84_23455  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NLX84_10640  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NLX84_23325  6-phospho-beta-glucosidase [KO:K01222] [EC:3.2.1.86]
NLX84_00375  ascB; 6-phospho-beta-glucosidase [KO:K01223] [EC:3.2.1.86]
NLX84_02445  6-phospho-beta-glucosidase [KO:K01223] [EC:3.2.1.86]
NLX84_03840  glycoside hydrolase family 1 protein [KO:K01223] [EC:3.2.1.86]
NLX84_12645  6-phospho-beta-glucosidase [KO:K01223] [EC:3.2.1.86]
NLX84_17915  crr; PTS glucose transporter subunit IIA [KO:K02777] [EC:2.7.1.-]
NLX84_09440  ptsG; PTS glucose transporter subunit IIBC [KO:K02779] [EC:2.7.1.199]
NLX84_11500  malX; maltose/glucose-specific PTS transporter subunit IIBC [KO:K02791] [EC:2.7.1.199 2.7.1.208]
NLX84_02450  ascF; PTS cellobiose/arbutin/salicin transporter subunit IIBC [KO:K02753] [EC:2.7.1.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
snem00020  Citrate cycle (TCA cycle)
snem00030  Pentose phosphate pathway
snem00500  Starch and sucrose metabolism
snem00620  Pyruvate metabolism
snem00640  Propanoate metabolism
snem00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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