KEGG   PATHWAY: sod00020
Entry
sod00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Sodalis praecaptivus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sod00020  Citrate cycle (TCA cycle)
sod00020

Module
sod_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sod00020]
sod_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sod00020]
sod_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sod00020]
sod_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sod00020]
sod_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sod00020]
Other DBs
GO: 0006099
Organism
Sodalis praecaptivus [GN:sod]
Gene
Sant_2776  gltA; Type II citrate synthase [KO:K01647] [EC:2.3.3.1]
Sant_4037  citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
Sant_1868  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Sant_3323  acnB; Bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Sant_2956  icd; Isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Sant_2771  sucA; Alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
Sant_2770  sucB; Dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
Sant_3326  lpdA; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Sant_2768  sucD; Succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Sant_2769  sucC; Succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
Sant_2773  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Sant_2772  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Sant_2775  sdhC; Succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
Sant_2774  sdhD; Succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
Sant_2415  frdA; Fumarate reductase subunit A [KO:K00244] [EC:1.3.5.1]
Sant_2416  frdB; Fumarate reductase subunit B [KO:K00245] [EC:1.3.5.1]
Sant_2417  frdC; Fumarate reductase subunit C [KO:K00246]
Sant_2418  frdD; Fumarate reductase subunit D [KO:K00247]
Sant_2005  fumC; Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Sant_3475  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Sant_1148  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Sant_0372  pckA; Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Sant_P0177  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Sant_3328  aceE; Pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
Sant_3327  aceF; Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Sant_1910  Pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sod00010  Glycolysis / Gluconeogenesis
sod00053  Ascorbate and aldarate metabolism
sod00061  Fatty acid biosynthesis
sod00071  Fatty acid degradation
sod00190  Oxidative phosphorylation
sod00220  Arginine biosynthesis
sod00250  Alanine, aspartate and glutamate metabolism
sod00280  Valine, leucine and isoleucine degradation
sod00350  Tyrosine metabolism
sod00470  D-Amino acid metabolism
sod00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system