KEGG   PATHWAY: spad00030
Entry
spad00030                   Pathway                                
Name
Pentose phosphate pathway - Streptomyces paludis
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spad00030  Pentose phosphate pathway
spad00030

Module
spad_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:spad00030]
spad_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:spad00030]
spad_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:spad00030]
spad_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:spad00030]
Other DBs
GO: 0006098
Organism
Streptomyces paludis [GN:spad]
Gene
DVK44_05665  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
DVK44_05635  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
DVK44_05645  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
DVK44_35900  hypothetical protein [KO:K07404] [EC:3.1.1.31]
DVK44_31505  NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
DVK44_15585  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
DVK44_03190  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
DVK44_31090  transketolase [KO:K00615] [EC:2.2.1.1]
DVK44_31095  transketolase [KO:K00615] [EC:2.2.1.1]
DVK44_05625  transketolase [KO:K00615] [EC:2.2.1.1]
DVK44_08180  transketolase family protein [KO:K00615] [EC:2.2.1.1]
DVK44_08185  transketolase [KO:K00615] [EC:2.2.1.1]
DVK44_17270  transketolase [KO:K00615] [EC:2.2.1.1]
DVK44_05630  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
DVK44_33655  RpiB/LacA/LacB family sugar-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
DVK44_09240  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
DVK44_35075  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
DVK44_34295  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
DVK44_22245  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
DVK44_06080  ribokinase [KO:K00852] [EC:2.7.1.15]
DVK44_34270  ribokinase [KO:K00852] [EC:2.7.1.15]
DVK44_01585  ribokinase [KO:K00852] [EC:2.7.1.15]
DVK44_31425  alpha-D-glucose phosphate-specific phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
DVK44_20880  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
DVK44_07570  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
DVK44_31630  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
DVK44_04390  gluconokinase [KO:K00851] [EC:2.7.1.12]
DVK44_31620  sugar kinase [KO:K00874] [EC:2.7.1.45]
DVK44_22765  sugar kinase [KO:K00874] [EC:2.7.1.45]
DVK44_30210  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
DVK44_18280  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
DVK44_22980  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
DVK44_01945  ATP-dependent 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
DVK44_24810  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
spad00010  Glycolysis / Gluconeogenesis
spad00040  Pentose and glucuronate interconversions
spad00052  Galactose metabolism
spad00230  Purine metabolism
spad00240  Pyrimidine metabolism
spad00340  Histidine metabolism
spad00630  Glyoxylate and dicarboxylate metabolism
spad00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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