KEGG   PATHWAY: spe00020
Entry
spe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Serratia proteamaculans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spe00020  Citrate cycle (TCA cycle)
spe00020

Module
spe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spe00020]
spe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spe00020]
spe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spe00020]
spe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spe00020]
spe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spe00020]
Other DBs
GO: 0006099
Organism
Serratia proteamaculans [GN:spe]
Gene
Spro_1262  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Spro_2654  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Spro_4008  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Spro_2025  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Spro_1267  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Spro_1268  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Spro_4009  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Spro_4777  pyridine nucleotide-disulphide oxidoreductase dimerisation region [KO:K00382] [EC:1.8.1.4]
Spro_1270  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Spro_1269  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Spro_1265  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Spro_1266  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Spro_1263  Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
Spro_1264  Succinate dehydrogenase hydrophobic membrane anchor [KO:K00242]
Spro_0419  fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
Spro_0418  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
Spro_0417  fumarate reductase subunit C [KO:K00246]
Spro_0416  fumarate reductase D subunit [KO:K00247]
Spro_4022  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Spro_2279  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Spro_0469  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Spro_1524  malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Spro_4617  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Spro_2098  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Spro_4011  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Spro_4010  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Spro_2604  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spe00010  Glycolysis / Gluconeogenesis
spe00053  Ascorbate and aldarate metabolism
spe00061  Fatty acid biosynthesis
spe00071  Fatty acid degradation
spe00190  Oxidative phosphorylation
spe00220  Arginine biosynthesis
spe00250  Alanine, aspartate and glutamate metabolism
spe00280  Valine, leucine and isoleucine degradation
spe00350  Tyrosine metabolism
spe00470  D-Amino acid metabolism
spe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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