KEGG   PATHWAY: srj00020
Entry
srj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces rochei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srj00020  Citrate cycle (TCA cycle)
srj00020

Module
srj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:srj00020]
srj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:srj00020]
srj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:srj00020]
srj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:srj00020]
srj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:srj00020]
Other DBs
GO: 0006099
Organism
Streptomyces rochei [GN:srj]
Gene
SRO_4737  citrate synthase [KO:K01647] [EC:2.3.3.1]
SRO_1016  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
SRO_1993  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
SRO_1994  citrate synthase [KO:K01647] [EC:2.3.3.1]
SRO_0441  hypothetical protein [KO:K01647] [EC:2.3.3.1]
SRO_0446  hypothetical protein [KO:K01647] [EC:2.3.3.1]
SRO_4140  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
SRO_1797  aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
SRO_1051  isocitrate dehydrogenase, NADP(+) dependent [KO:K00031] [EC:1.1.1.42]
SRO_2546  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
SRO_5281  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SRO_1726  hypothetical protein [KO:K00382] [EC:1.8.1.4]
SRO_3117  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SRO_3368  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SRO_3118  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SRO_3367  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SRO_2941  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
SRO_2942  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SRO_2715  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SRO_2900  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SRO_0899  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
SRO_2716  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SRO_2901  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SRO_0898  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SRO_2898  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
SRO_0900  succinate dehydrogenase [KO:K00241]
SRO_2899  succinate dehydrogenase [KO:K00242]
SRO_2743  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SRO_2744  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SRO_2928  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SRO_0588  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SRO_2796  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
SRO_5276  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
SRO_5069  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
SRO_5278  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
srj00010  Glycolysis / Gluconeogenesis
srj00053  Ascorbate and aldarate metabolism
srj00061  Fatty acid biosynthesis
srj00071  Fatty acid degradation
srj00190  Oxidative phosphorylation
srj00220  Arginine biosynthesis
srj00250  Alanine, aspartate and glutamate metabolism
srj00280  Valine, leucine and isoleucine degradation
srj00350  Tyrosine metabolism
srj00470  D-Amino acid metabolism
srj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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