KEGG   PATHWAY: svio00020
Entry
svio00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces violascens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
svio00020  Citrate cycle (TCA cycle)
svio00020

Module
svio_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:svio00020]
svio_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:svio00020]
svio_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:svio00020]
svio_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:svio00020]
svio_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:svio00020]
Other DBs
GO: 0006099
Organism
Streptomyces violascens [GN:svio]
Gene
HWN34_11925  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
HWN34_21360  citrate synthase [KO:K01647] [EC:2.3.3.1]
HWN34_04585  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HWN34_26520  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HWN34_08295  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
HWN34_04090  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HWN34_23755  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HWN34_18610  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HWN34_18605  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HWN34_19585  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HWN34_19580  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HWN34_19905  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HWN34_28540  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HWN34_19900  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HWN34_28545  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HWN34_19915  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HWN34_28535  succinate dehydrogenase [KO:K00241]
HWN34_19910  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
HWN34_20890  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HWN34_20880  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HWN34_19645  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HWN34_20525  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
HWN34_04860  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
HWN34_22870  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HWN34_23740  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HWN34_23750  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
svio00010  Glycolysis / Gluconeogenesis
svio00053  Ascorbate and aldarate metabolism
svio00061  Fatty acid biosynthesis
svio00071  Fatty acid degradation
svio00190  Oxidative phosphorylation
svio00220  Arginine biosynthesis
svio00250  Alanine, aspartate and glutamate metabolism
svio00280  Valine, leucine and isoleucine degradation
svio00350  Tyrosine metabolism
svio00470  D-Amino acid metabolism
svio00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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