KEGG   PATHWAY: thab00020
Entry
thab00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Thalassotalea sp. LPB0316
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
thab00020  Citrate cycle (TCA cycle)
thab00020

Module
thab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:thab00020]
thab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:thab00020]
thab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:thab00020]
thab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:thab00020]
thab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:thab00020]
Other DBs
GO: 0006099
Organism
Thalassotalea sp. LPB0316 [GN:thab]
Gene
LP316_08000  citrate synthase [KO:K01647] [EC:2.3.3.1]
LP316_00720  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LP316_00725  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LP316_11310  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LP316_12060  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LP316_09190  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
LP316_08025  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LP316_08030  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LP316_00745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LP316_08050  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LP316_08045  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LP316_08015  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LP316_08020  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LP316_08005  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LP316_08010  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LP316_12720  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LP316_04840  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LP316_04595  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LP316_00755  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LP316_00750  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
thab00010  Glycolysis / Gluconeogenesis
thab00061  Fatty acid biosynthesis
thab00071  Fatty acid degradation
thab00190  Oxidative phosphorylation
thab00220  Arginine biosynthesis
thab00250  Alanine, aspartate and glutamate metabolism
thab00280  Valine, leucine and isoleucine degradation
thab00350  Tyrosine metabolism
thab00470  D-Amino acid metabolism
thab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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