KEGG   PATHWAY: umr03008
Entry
umr03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Ursus maritimus (polar bear)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
umr03008  Ribosome biogenesis in eukaryotes
umr03008

Organism
Ursus maritimus (polar bear) [GN:umr]
Gene
103656178  EMG1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
103659289  DKC1; H/ACA ribonucleoprotein complex subunit DKC1 isoform X1 [KO:K11131] [EC:5.4.99.-]
103659326  NAT10; RNA cytidine acetyltransferase isoform X2 [KO:K14521] [EC:2.3.1.-]
103659666  WDR75; WD repeat-containing protein 75 [KO:K14552]
103659755  NOP58; nucleolar protein 58 isoform X1 [KO:K14565]
103659971  MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
103659982  MDN1; midasin [KO:K14572]
103660219  EFL1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
103660862  UTP18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
103661089  FBL; rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
103661236  RAN; GTP-binding nuclear protein Ran [KO:K07936]
103661495  POP1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
103661740  GAR1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
103661810  SPATA5; ATPase family protein 2 homolog isoform X1 [KO:K14575]
103661959  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
103662366  REXO2; oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
103663214  RCL1; RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
103663573  UTP15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
103663608  AK6; adenylate kinase isoenzyme 6 isoform X1 [KO:K18532] [EC:2.7.4.3]
103664192  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
103664263  IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 isoform X2 [KO:K14561]
103664597  TCOF1; treacle protein isoform X1 [KO:K14562]
103664743  DROSHA; ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
103664789  FBLL1; rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
103664934  RIOK1; serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
103664950  RPP40; ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
103666372  GNL2; nucleolar GTP-binding protein 2 [KO:K14537]
103667003  [KO:K14570] [EC:3.1.-.-]
103667037  NOL6; nucleolar protein 6 [KO:K14544]
103667052  RPP25L; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
103667238  NVL; nuclear valosin-containing protein-like isoform X2 [KO:K14571]
103667252  UTP6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
103667617  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 [KO:K14567]
103667938  BMS1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
103667944  RPP30; ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
103668487  TBL3; transducin beta-like protein 3 [KO:K14555]
103668909  REXO5; RNA exonuclease 5 isoform X1 [KO:K14570] [EC:3.1.-.-]
103669805  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
103670044  POP7; ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
103670174  SBDS; ribosome maturation protein SBDS [KO:K14574]
103671126  FCF1; rRNA-processing protein FCF1 homolog isoform X1 [KO:K14566]
103671303  XPO1; exportin-1 [KO:K14290]
103671617  WDR43; WD repeat-containing protein 43 [KO:K14546]
103672213  RIOK2; serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
103673511  NOP10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
103673609  NOB1; RNA-binding protein NOB1 [KO:K11883]
103673617  UTP4; U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
103673753  CSNK2A2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
103673825  [KO:K03538] [EC:3.1.26.5]
103673984  GTPBP4; nucleolar GTP-binding protein 1 [KO:K06943]
103674061  RRP7A; ribosomal RNA-processing protein 7 homolog A isoform X1 [KO:K14545]
103674077  SNU13; NHP2-like protein 1 isoform X2 [KO:K12845]
103674361  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
103674512  NOP56; nucleolar protein 56 [KO:K14564]
103674757  GNL3; guanine nucleotide-binding protein-like 3 [KO:K14538]
103674888  NXF3; nuclear RNA export factor 3 [KO:K14284]
103674958  [KO:K14284]
103674968  [KO:K14284]
103675079  [KO:K14284]
103675810  WDR36; WD repeat-containing protein 36 [KO:K14554]
103675995  LSG1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
103676632  RBM28; RNA-binding protein 28 [KO:K14573]
103677227  NMD3; 60S ribosomal export protein NMD3 [KO:K07562]
103677852  XRN2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
103677857  NXT1; NTF2-related export protein 1 [KO:K14285]
103678204  NXF1; nuclear RNA export factor 1 [KO:K14284]
103678320  POP5; ribonuclease P/MRP protein subunit POP5 isoform X1 [KO:K03537] [EC:3.1.26.5]
103678392  XRN1; 5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
103678974  IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
103679119  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
103679745  NXT2; NTF2-related export protein 2 isoform X2 [KO:K14285]
103680005  NHP2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
103680755  PWP2; periodic tryptophan protein 2 homolog [KO:K14558]
103680869  WDR3; WD repeat-containing protein 3 [KO:K14556]
103681290  GNL3L; guanine nucleotide-binding protein-like 3-like protein isoform X1 [KO:K14538]
103681793  REXO1; RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
103682308  CSNK2B; casein kinase II subunit beta [KO:K03115]
121100546  [KO:K01986]
121102137  [KO:K01979]
121102138  [KO:K01982]
121105101  [KO:K14483]
121105102  [KO:K14483]
121105103  [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
umr03010  Ribosome
KO pathway
ko03008   

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