KEGG   PATHWAY: vrm00230
Entry
vrm00230                    Pathway                                
Name
Purine metabolism - Veillonella rodentium
Class
Metabolism; Nucleotide metabolism
Pathway map
vrm00230  Purine metabolism
vrm00230

Module
vrm_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:vrm00230]
vrm_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vrm00230]
vrm_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vrm00230]
vrm_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vrm00230]
vrm_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vrm00230]
Other DBs
GO: 0006163 0042278
Organism
Veillonella rodentium [GN:vrm]
Gene
44547418_00782  nudF; ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
44547418_00783  deoB; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
44547418_01646  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
44547418_00629  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
44547418_00389  purF; Amidophosphoribosyltransferase precursor [KO:K00764] [EC:2.4.2.14]
44547418_00393  purD; Phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
44547418_00391  purN; Phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
44547418_00382  purL; Phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
44547418_00390  purM; Phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
44547418_00387  purE; N5-carboxyaminoimidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
44547418_00388  purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
44547418_01848  purB; Adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
44547418_00392  purH; Bifunctional purine biosynthesis protein PurH [KO:K00602] [EC:2.1.2.3 3.5.4.10]
44547418_01062  surE; 5'-nucleotidase surE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
44547418_01509  yfiH; Laccase domain protein yfiH [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
44547418_00523  hpt; Hypoxanthine-guanine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
44547418_01067  guaB; Inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
44547418_00919  ndkA; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
44547418_00453  rdgB; dITP/XTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
44547418_00384  xpt; Xanthine phosphoribosyltransferase [KO:K03816] [EC:2.4.2.22]
44547418_00209  guaA; GMP synthase [glutamine-hydrolyzing] [KO:K01951] [EC:6.3.5.2]
44547418_01382  guaC; GMP reductase [KO:K00364] [EC:1.7.1.7]
44547418_00534  guaD; Guanine deaminase [KO:K01487] [EC:3.5.4.3]
44547418_00856  gmk; Guanylate kinase [KO:K00942] [EC:2.7.4.8]
44547418_01703  nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha [KO:K00525] [EC:1.17.4.1]
44547418_01704  nrdB; Ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
44547418_00707  nrdD; Anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
44547418_01071  dgt; Deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
44547418_00296  yfbR; 5'-nucleotidase yfbR [KO:K08722] [EC:3.1.3.89]
44547418_01294  relA; GTP pyrophosphokinase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
44547418_00639  gppA; Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
44547418_00640  ppx_2; Exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
44547418_00521  ppx_1; Exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
44547418_01841  purA; Adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
44547418_00785  adeC; Adenine deaminase [KO:K01486] [EC:3.5.4.2]
44547418_01566  adk; Adenylate kinase [KO:K00939] [EC:2.7.4.3]
44547418_01440  mazG; Nucleoside triphosphate pyrophosphohydrolase/pyrophosphatase MazG [KO:K04765] [EC:3.6.1.9]
44547418_00334  cysN; Sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
44547418_00333  cysD; Sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
44547418_01351  arcC1; Carbamate kinase 1 [KO:K00926] [EC:2.7.2.2]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
vrm00030  Pentose phosphate pathway
vrm00220  Arginine biosynthesis
vrm00250  Alanine, aspartate and glutamate metabolism
vrm00260  Glycine, serine and threonine metabolism
vrm00340  Histidine metabolism
vrm00630  Glyoxylate and dicarboxylate metabolism
vrm00730  Thiamine metabolism
vrm00740  Riboflavin metabolism
vrm00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

DBGET integrated database retrieval system