KEGG   PATHWAY: vsa00020
Entry
vsa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aliivibrio salmonicida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vsa00020  Citrate cycle (TCA cycle)
vsa00020

Module
vsa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vsa00020]
vsa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vsa00020]
vsa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vsa00020]
vsa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vsa00020]
Other DBs
GO: 0006099
Organism
Aliivibrio salmonicida [GN:vsa]
Gene
VSAL_I0359  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VSAL_I0841  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
VSAL_I0842  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
VSAL_I0843  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
VSAL_I0844  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
VSAL_I0845  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
VSAL_I0846  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
VSAL_I0847  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
VSAL_I0848  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
VSAL_I0849  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
VSAL_I1347  [KO:K01676] [EC:4.2.1.2]
VSAL_I2205  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
VSAL_I2595  acnB; aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
VSAL_I2623  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
VSAL_I2625  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
VSAL_I2712  [KO:K00382] [EC:1.8.1.4]
VSAL_I2788  [KO:K00244] [EC:1.3.5.1]
VSAL_I2789  frdB; fumarate reductase complex, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
VSAL_I2790  frdC; fumarate reductase complex, membrane anchor subunit C [KO:K00246]
VSAL_I2791  frdD; fumarate reductase complex, membrane anchor subunit D [KO:K00247]
VSAL_I2928  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vsa00010  Glycolysis / Gluconeogenesis
vsa00061  Fatty acid biosynthesis
vsa00071  Fatty acid degradation
vsa00190  Oxidative phosphorylation
vsa00220  Arginine biosynthesis
vsa00250  Alanine, aspartate and glutamate metabolism
vsa00280  Valine, leucine and isoleucine degradation
vsa00350  Tyrosine metabolism
vsa00470  D-Amino acid metabolism
vsa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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