KEGG   PATHWAY: vsr00030
Entry
vsr00030                    Pathway                                
Name
Pentose phosphate pathway - Vibrio spartinae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vsr00030  Pentose phosphate pathway
vsr00030

Module
vsr_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:vsr00030]
vsr_M00005  PRPP biosynthesis, ribose-5P => PRPP [PATH:vsr00030]
vsr_M00006  Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:vsr00030]
vsr_M00007  Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:vsr00030]
vsr_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde-3P [PATH:vsr00030]
vsr_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde-3P [PATH:vsr00030]
Other DBs
GO: 0006098
Organism
Vibrio spartinae [GN:vsr]
Gene
Vspart_00177  fas2_1; Ferredoxin fas2 [KO:K00615] [EC:2.2.1.1]
Vspart_00179  dxs_2; 1-deoxy-D-xylulose-5-phosphate synthase [KO:K00615] [EC:2.2.1.1]
Vspart_00202  fas2_2; Ferredoxin fas2 [KO:K00615] [EC:2.2.1.1]
Vspart_00203  dxs_3; 1-deoxy-D-xylulose-5-phosphate synthase [KO:K00615] [EC:2.2.1.1]
Vspart_00251  pfkA_1; 6-phosphofructokinase isozyme 1 [KO:K00850] [EC:2.7.1.11]
Vspart_00252  glpX; Fructose-1,6-bisphosphatase 1 class 2 [KO:K02446] [EC:3.1.3.11]
Vspart_00306  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Vspart_00397  fbp; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
Vspart_00493  rpiA; Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
Vspart_00579  gnl; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Vspart_00780  deoC1; Deoxyribose-phosphate aldolase 1 [KO:K01619] [EC:4.1.2.4]
Vspart_00781  rbsK_1; Ribokinase [KO:K28747]
Vspart_00863  fba; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
Vspart_00866  pfkA_2; 6-phosphofructokinase isozyme 1 [KO:K00850] [EC:2.7.1.11]
Vspart_02263  rbsK_2; Ribokinase [KO:K00852] [EC:2.7.1.15]
Vspart_02358  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
Vspart_02433  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Vspart_02585  deoC; Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
Vspart_02701  kdgK_2; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
Vspart_02702  eda_1; Putative KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Vspart_02844  fbaA; Fructose-bisphosphate aldolase class 2 [KO:K01624] [EC:4.1.2.13]
Vspart_02847  tktA_1; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
Vspart_02933  kdgK_3; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
Vspart_02934  eda_2; Putative KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Vspart_03047  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Vspart_03219  kbaY_1; D-tagatose-1,6-bisphosphate aldolase subunit KbaY [KO:K01624] [EC:4.1.2.13]
Vspart_03489  kbaY_2; D-tagatose-1,6-bisphosphate aldolase subunit KbaY [KO:K01624] [EC:4.1.2.13]
Vspart_03490  gatY; D-tagatose-1,6-bisphosphate aldolase subunit GatY [KO:K01624] [EC:4.1.2.13]
Vspart_03646  gntK; Thermoresistant gluconokinase [KO:K00851] [EC:2.7.1.12]
Vspart_03774  gndA; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Vspart_03775  pgl_2; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
Vspart_03776  zwf; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Vspart_04026  tal; Transaldolase [KO:K00616] [EC:2.2.1.2]
Vspart_04027  tktA_2; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
Vspart_04079  rbsK_4; Ribokinase [KO:K00852] [EC:2.7.1.15]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
vsr00010  Glycolysis / Gluconeogenesis
vsr00040  Pentose and glucuronate interconversions
vsr00052  Galactose metabolism
vsr00230  Purine metabolism
vsr00240  Pyrimidine metabolism
vsr00340  Histidine metabolism
vsr00630  Glyoxylate and dicarboxylate metabolism
vsr00750  Vitamin B6 metabolism
KO pathway
ko00030   

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