KEGG   PATHWAY: vvl00020
Entry
vvl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio vulnificus 93U204
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vvl00020  Citrate cycle (TCA cycle)
vvl00020

Module
vvl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vvl00020]
vvl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vvl00020]
vvl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vvl00020]
vvl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vvl00020]
vvl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vvl00020]
Other DBs
GO: 0006099
Organism
Vibrio vulnificus 93U204 [GN:vvl]
Gene
VV93_v1c09500  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
VV93_v1c24660  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
VV93_v1c20350  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
VV93_v1c09550  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
VV93_v1c09560  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
VV93_v1c24830  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
VV93_v1c09580  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
VV93_v1c09570  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
VV93_v1c09530  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
VV93_v1c09540  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
VV93_v1c09510  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
VV93_v1c09520  sdhD; succinate dehydrogenase, hydrophobic anchor subunit [KO:K00242]
VV93_v1c28200  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
VV93_v1c28210  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
VV93_v1c28220  fumarate reductase subunit C [KO:K00246]
VV93_v1c28230  fumarate reductase subunit D [KO:K00247]
VV93_v1c18430  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
VV93_v1c04350  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VV93_v1c01920  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
VV93_v1c24850  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
VV93_v1c24840  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vvl00010  Glycolysis / Gluconeogenesis
vvl00053  Ascorbate and aldarate metabolism
vvl00061  Fatty acid biosynthesis
vvl00071  Fatty acid degradation
vvl00190  Oxidative phosphorylation
vvl00220  Arginine biosynthesis
vvl00250  Alanine, aspartate and glutamate metabolism
vvl00280  Valine, leucine and isoleucine degradation
vvl00350  Tyrosine metabolism
vvl00470  D-Amino acid metabolism
vvl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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