KEGG   PATHWAY: xbv00240
Entry
xbv00240                    Pathway                                
Name
Pyrimidine metabolism - Xenorhabdus bovienii CS03
Class
Metabolism; Nucleotide metabolism
Pathway map
xbv00240  Pyrimidine metabolism
xbv00240

Module
xbv_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:xbv00240]
xbv_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:xbv00240]
xbv_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:xbv00240]
xbv_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:xbv00240]
Other DBs
GO: 0006220 0006213
Organism
Xenorhabdus bovienii CS03 [GN:xbv]
Gene
XBW1_1042  carB; Carbamoyl-phosphate synthase large chain [KO:K01955] [EC:6.3.5.5]
XBW1_1043  carA; Carbamoyl-phosphate synthase small chain [KO:K01956] [EC:6.3.5.5]
XBW1_4378  pyrB; Aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
XBW1_4384  pyrI; Aspartate carbamoyltransferase regulatory chain [KO:K00610]
XBW1_0137  Dihydroorotase implied in pseudouridine synthesis [KO:K01465] [EC:3.5.2.3]
XBW1_2683  pyrC; Dihydroorotase [KO:K01465] [EC:3.5.2.3]
XBW1_3278  pyrD; Dihydroorotate dehydrogenase [KO:K00254] [EC:1.3.5.2]
XBW1_4711  pyrE; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
XBW1_2038  pyrF; Orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
XBW1_4170  pyrH; Uridylate kinase [KO:K09903] [EC:2.7.4.22]
XBW1_1790  ndk; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
XBW1_3958  mazG; Nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
XBW1_0539  conserved protein of unknown function [KO:K06287] [EC:3.6.1.-]
XBW1_3957  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
XBW1_3324  cmk; Cytidylate kinase [KO:K00945] [EC:2.7.4.25]
XBW1_3391  udk; Uridine kinase [KO:K00876] [EC:2.7.1.48]
XBW1_0999  putative 5`-nucleotidase family protein [KO:K01081] [EC:3.1.3.5]
XBW1_0901  ushA; Protein UshA [Includes: UDP-sugar hydrolase; 5'-nucleotidase] [KO:K11751] [EC:3.1.3.5 3.6.1.45]
XBW1_4040  surE; Multifunctional protein surE [Includes: 5'/3'-nucleotidase; Exopolyphosphatase] [KO:K03787] [EC:3.1.3.5 3.1.3.6]
XBW1_1138  IUNH; Inosine-uridine preferring nucleoside hydrolase [KO:K25589] [EC:3.2.2.2 3.2.2.3]
XBW1_4081  udp; Uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
XBW1_2402  upp; Uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
XBW1_1000  cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
XBW1_2291  yeiI; Uncharacterized sugar kinase yeiI [KO:K16328] [EC:2.7.1.83]
XBW1_4349  psuK; Pseudouridine kinase [KO:K16328] [EC:2.7.1.83]
XBW1_2290  psuG; Pseudouridine-5'-phosphate glycosidase 2 [KO:K16329] [EC:4.2.1.70]
XBW1_4188  ygdH; LOG family protein ygdH [KO:K06966] [EC:3.2.2.10 3.2.2.-]
XBW1_3397  cdd; Cytidine deaminase [KO:K01489] [EC:3.5.4.5]
XBW1_3390  dcd; Deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
XBW1_2761  nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha [KO:K00525] [EC:1.17.4.1]
XBW1_2759  nrdB; Ribonucleoside-diphosphate reductase 1 subunit beta [KO:K00526] [EC:1.17.4.1]
XBW1_3154  conserved protein of unknown function [KO:K08722] [EC:3.1.3.89]
XBW1_2484  tmk; Thymidylate kinase [KO:K00943] [EC:2.7.4.9]
XBW1_4709  dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
XBW1_1123  deoA; Thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
XBW1_2224  tdk; deoxythymidine kinase [KO:K00857] [EC:2.7.1.21]
XBW1_4214  thyA; Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
XBW1_0887  putative enzyme with luciferase-like ATPase domain [KO:K09018] [EC:1.14.99.46]
XBW1_2076  ydfG; NADP-dependent L-serine/L-allo-threonine dehydrogenase ydfG [KO:K16066] [EC:1.1.1.381 1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
xbv00030  Pentose phosphate pathway
xbv00220  Arginine biosynthesis
xbv00250  Alanine, aspartate and glutamate metabolism
xbv00280  Valine, leucine and isoleucine degradation
xbv00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

DBGET integrated database retrieval system