KEGG   PATHWAY: xcf00020
Entry
xcf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xanthomonas citri pv. citri mf20
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xcf00020  Citrate cycle (TCA cycle)
xcf00020

Module
xcf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xcf00020]
xcf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xcf00020]
xcf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xcf00020]
xcf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xcf00020]
Other DBs
GO: 0006099
Organism
Xanthomonas citri pv. citri mf20 [GN:xcf]
Gene
J172_03563  citrate synthase [KO:K01647] [EC:2.3.3.1]
J172_02029  aconitase [KO:K01681] [EC:4.2.1.3]
J172_02032  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J172_04003  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
J172_01164  Isocitrate/isopropylmalate dehydrogenase [KO:K00030] [EC:1.1.1.41]
J172_01678  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
J172_01677  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
J172_03834  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
J172_01676  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
J172_03411  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
J172_03412  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
J172_02227  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
J172_02229  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
J172_02225  succinate dehydrogenase subunit C [KO:K00241]
J172_02226  succinate dehydrogenase subunit D [KO:K00242]
J172_01598  fumarase, class I, homodimeric [KO:K01676] [EC:4.2.1.2]
J172_01685  fumarase, class II [KO:K01679] [EC:4.2.1.2]
J172_01124  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
J172_00689  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
J172_03836  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xcf00010  Glycolysis / Gluconeogenesis
xcf00053  Ascorbate and aldarate metabolism
xcf00061  Fatty acid biosynthesis
xcf00071  Fatty acid degradation
xcf00190  Oxidative phosphorylation
xcf00220  Arginine biosynthesis
xcf00250  Alanine, aspartate and glutamate metabolism
xcf00280  Valine, leucine and isoleucine degradation
xcf00350  Tyrosine metabolism
xcf00470  D-Amino acid metabolism
xcf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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