KEGG   PATHWAY: xph00030
Entry
xph00030                    Pathway                                
Name
Pentose phosphate pathway - Xanthomonas phaseoli
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xph00030  Pentose phosphate pathway
xph00030

Module
xph_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:xph00030]
xph_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:xph00030]
xph_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:xph00030]
xph_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:xph00030]
xph_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:xph00030]
xph_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:xph00030]
Other DBs
GO: 0006098
Organism
Xanthomonas phaseoli [GN:xph]
Gene
XppCFBP6546_19255  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
XppCFBP6546_01930  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
XppCFBP6546_14055  XppCFBP6546P_14055; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
XppCFBP6546_01920  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
XppCFBP6546_08175  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
XppCFBP6546_09390  XppCFBP6546P_09390; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
XppCFBP6546_17350  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
XppCFBP6546_06985  XppCFBP6546P_06985; transaldolase [KO:K00616] [EC:2.2.1.2]
XppCFBP6546_17155  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
XppCFBP6546_11075  XppCFBP6546P_11075; RpiB/LacA/LacB family sugar-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
XppCFBP6546_07340  XppCFBP6546P_07340; ribokinase [KO:K00852] [EC:2.7.1.15]
XppCFBP6546_14840  XppCFBP6546P_14840; phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
XppCFBP6546_16440  XppCFBP6546P_16440; phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
XppCFBP6546_06765  XppCFBP6546P_06765; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
XppCFBP6546_01915  XppCFBP6546P_01915; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
XppCFBP6546_01910  XppCFBP6546P_01910; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
XppCFBP6546_18465  XppCFBP6546P_18465; membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [KO:K00117] [EC:1.1.5.2]
XppCFBP6546_18000  XppCFBP6546P_18000; glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
XppCFBP6546_13090  XppCFBP6546P_13090; SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
XppCFBP6546_09020  XppCFBP6546P_09020; SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
XppCFBP6546_22280  XppCFBP6546P_22280; D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
XppCFBP6546_13370  XppCFBP6546P_13370; AAA family ATPase [KO:K00851] [EC:2.7.1.12]
XppCFBP6546_11210  XppCFBP6546P_11210; sugar kinase [KO:K00874] [EC:2.7.1.45]
XppCFBP6546_17540  XppCFBP6546P_17540; fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
XppCFBP6546_11300  XppCFBP6546P_11300; class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
XppCFBP6546_17005  XppCFBP6546P_17005; 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
xph00010  Glycolysis / Gluconeogenesis
xph00040  Pentose and glucuronate interconversions
xph00052  Galactose metabolism
xph00230  Purine metabolism
xph00240  Pyrimidine metabolism
xph00340  Histidine metabolism
xph00630  Glyoxylate and dicarboxylate metabolism
xph00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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