KEGG   DISEASE: Pontocerebellar hypoplasia
Entry
H00897                      Disease                                
Name
Pontocerebellar hypoplasia
Description
Pontocerebellar hypoplasia (PCH) is a group of inherited progressive neurodegenerative disorders with prenatal onset. Up to now ten different subtypes have been reported. All subtypes share common characteristics, including hypoplasia/atrophy of cerebellum and pons, progressive microcephaly, and variable cerebral involvement. Mutations in three tRNA splicing endonuclease subunit genes were found to be responsible for PCH2, PCH4 and PCH5. Mutations in the nuclear encoded mitochondrial arginyl- tRNA synthetase gene underlie PCH6. PCH1 is caused by homozygous mutation in the VRK1 gene.
Category
Congenital malformation
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  Multiple developmental anomalies or syndromes
   LD20  Syndromes with central nervous system anomalies as a major feature
    H00897  Pontocerebellar hypoplasia
Pathway-based classification of diseases [BR:br08402]
 Cellular process
  nt06541  Cytoskeleton in neurons
   H00897  Pontocerebellar hypoplasia
Pathway
hsa03018  RNA degradation
hsa00970  Aminoacyl-tRNA biosynthesis
hsa03040  Spliceosome
Network
nt06541 Cytoskeleton in neurons
Gene
(PCH1A) VRK1 [HSA:7443] [KO:K08816]
(PCH1B) EXOSC3 [HSA:51010] [KO:K03681]
(PCH1C) EXOSC8 [HSA:11340] [KO:K12586]
(PCH1D) EXOSC9 [HSA:5393] [KO:K03678]
(PCH1E) SLC25A46 [HSA:91137] [KO:K03454]
(PCH1F) EXOSC1 [HSA:51013] [KO:K07573]
(PCH2A/4/5) TSEN54 [HSA:283989] [KO:K15326]
(PCH2B) TSEN2 [HSA:80746] [KO:K15322]
(PCH2C) TSEN34 [HSA:79042] [KO:K15323]
(PCH2D) SEPSECS [HSA:51091] [KO:K03341]
(PCH2E) VPS53 [HSA:55275] [KO:K20299]
(PCH2F) TSEN15 [HSA:116461] [KO:K15324]
(PCH3) PCLO [HSA:27445] [KO:K16882]
(PCH6) RARS2 [HSA:57038] [KO:K01887]
(PCH7) TOE1 [HSA:114034] [KO:K13202]
(PCH8) CHMP1A [HSA:5119] [KO:K12197]
(PCH9) AMPD2 [HSA:271] [KO:K01490]
(PCH10) CLP1 [HSA:10978] [KO:K14399]
(PCH11) TBC1D23 [HSA:55773] [KO:K22555]
(PCH12) COASY [HSA:80347] [KO:K02318]
(PCH13) VPS51 [HSA:738] [KO:K20296]
(PCH14) PPIL1 [HSA:51645] [KO:K12733]
(PCH15) CDC40 [HSA:51362] [KO:K12816]
(PCH16) MINPP1 [HSA:9562] [KO:K03103]
(PCH17) PRDM13 [HSA:59336] [KO:K24645]
Other DBs
ICD-11: LD20.01
MeSH: C580383
OMIM: 607596 614678 616081 618065 619303 619304 277470 612389 612390 613811 615851 617026 608027 225753 610204 611523 614969 614961 615809 615803 617695 618266 618606 619301 619302 619527 619909
Reference
  Authors
Namavar Y, Barth PG, Poll-The BT, Baas F
  Title
Classification, diagnosis and potential mechanisms in pontocerebellar hypoplasia.
  Journal
Orphanet J Rare Dis 6:50 (2011)
DOI:10.1186/1750-1172-6-50
Reference
PMID:19646678 (PCH1A)
  Authors
Renbaum P, Kellerman E, Jaron R, Geiger D, Segel R, Lee M, King MC, Levy-Lahad E
  Title
Spinal muscular atrophy with pontocerebellar hypoplasia is caused by a mutation in the VRK1 gene.
  Journal
Am J Hum Genet 85:281-9 (2009)
DOI:10.1016/j.ajhg.2009.07.006
Reference
PMID:23564332 (PCH1B)
  Authors
Biancheri R, Cassandrini D, Pinto F, Trovato R, Di Rocco M, Mirabelli-Badenier M, Pedemonte M, Panicucci C, Trucks H, Sander T, Zara F, Rossi A, Striano P, Minetti C, Santorelli FM
  Title
EXOSC3 mutations in isolated cerebellar hypoplasia and spinal anterior horn involvement.
  Journal
J Neurol 260:1866-70 (2013)
DOI:10.1007/s00415-013-6896-0
Reference
PMID:24989451 (PCH1C)
  Authors
Boczonadi V, Muller JS, Pyle A, Munkley J, Dor T, Quartararo J, Ferrero I, Karcagi V, Giunta M, Polvikoski T, Birchall D, Princzinger A, Cinnamon Y, Lutzkendorf S, Piko H, Reza M, Florez L, Santibanez-Koref M, Griffin H, Schuelke M, Elpeleg O, Kalaydjieva L, Lochmuller H, Elliott DJ, Chinnery PF, Edvardson S, Horvath R
  Title
EXOSC8 mutations alter mRNA metabolism and cause hypomyelination with spinal muscular atrophy and cerebellar hypoplasia.
  Journal
Nat Commun 5:4287 (2014)
DOI:10.1038/ncomms5287
Reference
PMID:29727687 (PCH1D)
  Authors
Burns DT, Donkervoort S, Muller JS, Knierim E, Bharucha-Goebel D, Faqeih EA, Bell SK, AlFaifi AY, Monies D, Millan F, Retterer K, Dyack S, MacKay S, Morales-Gonzalez S, Giunta M, Munro B, Hudson G, Scavina M, Baker L, Massini TC, Lek M, Hu Y, Ezzo D, AlKuraya FS, Kang PB, Griffin H, Foley AR, Schuelke M, Horvath R, Bonnemann CG
  Title
Variants in EXOSC9 Disrupt the RNA Exosome and Result in Cerebellar Atrophy with Spinal Motor Neuronopathy.
  Journal
Am J Hum Genet 102:858-873 (2018)
DOI:10.1016/j.ajhg.2018.03.011
Reference
PMID:26168012 (PCH1E)
  Authors
Abrams AJ, Hufnagel RB, Rebelo A, Zanna C, Patel N, Gonzalez MA, Campeanu IJ, Griffin LB, Groenewald S, Strickland AV, Tao F, Speziani F, Abreu L, Schule R, Caporali L, La Morgia C, Maresca A, Liguori R, Lodi R, Ahmed ZM, Sund KL, Wang X, Krueger LA, Peng Y, Prada CE, Prows CA, Schorry EK, Antonellis A, Zimmerman HH, Abdul-Rahman OA, Yang Y, Downes SM, Prince J, Fontanesi F, Barrientos A, Nemeth AH, Carelli V, Huang T, Zuchner S, Dallman JE
  Title
Mutations in SLC25A46, encoding a UGO1-like protein, cause an optic atrophy spectrum disorder.
  Journal
Nat Genet 47:926-32 (2015)
DOI:10.1038/ng.3354
Reference
PMID:33463720 (PCH1F)
  Authors
Somashekar PH, Kaur P, Stephen J, Guleria VS, Kadavigere R, Girisha KM, Bielas S, Upadhyai P, Shukla A
  Title
Bi-allelic missense variant, p.Ser35Leu in EXOSC1 is associated with pontocerebellar hypoplasia.
  Journal
Clin Genet 99:594-600 (2021)
DOI:10.1111/cge.13928
Reference
PMID:18711368 (PCH2A PCH2B PCH2C PCH4)
  Authors
Budde BS, Namavar Y, Barth PG, Poll-The BT, Nurnberg G, Becker C, van Ruissen F, Weterman MA, Fluiter K, te Beek ET, Aronica E, van der Knaap MS, Hohne W, Toliat MR, Crow YJ, Steinling M, Voit T, Roelenso F, Brussel W, Brockmann K, Kyllerman M, Boltshauser E, Hammersen G, Willemsen M, Basel-Vanagaite L, Krageloh-Mann I, de Vries LS, Sztriha L, Muntoni F, Ferrie CD, Battini R, Hennekam RC, Grillo E, Beemer FA, Stoets LM, Wollnik B, Nurnberg P, Baas F
  Title
tRNA splicing endonuclease mutations cause pontocerebellar hypoplasia.
  Journal
Nat Genet 40:1113-8 (2008)
DOI:10.1038/ng.204
Reference
PMID:20920667 (PCH2D)
  Authors
Agamy O, Ben Zeev B, Lev D, Marcus B, Fine D, Su D, Narkis G, Ofir R, Hoffmann C, Leshinsky-Silver E, Flusser H, Sivan S, Soll D, Lerman-Sagie T, Birk OS
  Title
Mutations disrupting selenocysteine formation cause progressive cerebello-cerebral atrophy.
  Journal
Am J Hum Genet 87:538-44 (2010)
DOI:10.1016/j.ajhg.2010.09.007
Reference
PMID:24577744 (PCH2E)
  Authors
Feinstein M, Flusser H, Lerman-Sagie T, Ben-Zeev B, Lev D, Agamy O, Cohen I, Kadir R, Sivan S, Leshinsky-Silver E, Markus B, Birk OS
  Title
VPS53 mutations cause progressive cerebello-cerebral atrophy type 2 (PCCA2).
  Journal
J Med Genet 51:303-8 (2014)
DOI:10.1136/jmedgenet-2013-101823
Reference
PMID:27392077 (PCH2F)
  Authors
Breuss MW, Sultan T, James KN, Rosti RO, Scott E, Musaev D, Furia B, Reis A, Sticht H, Al-Owain M, Alkuraya FS, Reuter MS, Abou Jamra R, Trotta CR, Gleeson JG
  Title
Autosomal-Recessive Mutations in the tRNA Splicing Endonuclease Subunit TSEN15 Cause Pontocerebellar Hypoplasia and Progressive Microcephaly.
  Journal
Am J Hum Genet 99:228-35 (2016)
DOI:10.1016/j.ajhg.2016.05.023
Reference
PMID:25832664 (PCH3)
  Authors
Ahmed MY, Chioza BA, Rajab A, Schmitz-Abe K, Al-Khayat A, Al-Turki S, Baple EL, Patton MA, Al-Memar AY, Hurles ME, Partlow JN, Hill RS, Evrony GD, Servattalab S, Markianos K, Walsh CA, Crosby AH, Mochida GH
  Title
Loss of PCLO function underlies pontocerebellar hypoplasia type III.
  Journal
Neurology 84:1745-50 (2015)
DOI:10.1212/WNL.0000000000001523
Reference
PMID:21368912 (PCH5)
  Authors
Namavar Y, Chitayat D, Barth PG, van Ruissen F, de Wissel MB, Poll-The BT, Silver R, Baas F
  Title
TSEN54 mutations cause pontocerebellar hypoplasia type 5.
  Journal
Eur J Hum Genet 19:724-6 (2011)
DOI:10.1038/ejhg.2011.8
Reference
PMID:17847012 (PCH6)
  Authors
Edvardson S, Shaag A, Kolesnikova O, Gomori JM, Tarassov I, Einbinder T, Saada A, Elpeleg O
  Title
Deleterious mutation in the mitochondrial arginyl-transfer RNA synthetase gene is associated with pontocerebellar hypoplasia.
  Journal
Am J Hum Genet 81:857-62 (2007)
DOI:10.1086/521227
Reference
PMID:28092684 (PCH7)
  Authors
Lardelli RM, Schaffer AE, Eggens VR, Zaki MS, Grainger S, Sathe S, Van Nostrand EL, Schlachetzki Z, Rosti B, Akizu N, Scott E, Silhavy JL, Heckman LD, Rosti RO, Dikoglu E, Gregor A, Guemez-Gamboa A, Musaev D, Mande R, Widjaja A, Shaw TL, Markmiller S, Marin-Valencia I, Davies JH, de Meirleir L, Kayserili H, Altunoglu U, Freckmann ML, Warwick L, Chitayat D, Blaser S, Caglayan AO, Bilguvar K, Per H, Fagerberg C, Christesen HT, Kibaek M, Aldinger KA, Manchester D, Matsumoto N, Muramatsu K, Saitsu H, Shiina M, Ogata K, Foulds N, Dobyns WB, Chi NC, Traver D, Spaccini L, Bova SM, Gabriel SB, Gunel M, Valente EM, Nassogne MC, Bennett EJ, Yeo GW, Baas F, Lykke-Andersen J, Gleeson JG
  Title
Biallelic mutations in the 3' exonuclease TOE1 cause pontocerebellar hypoplasia and uncover a role in snRNA processing.
  Journal
Nat Genet 49:457-464 (2017)
DOI:10.1038/ng.3762
Reference
PMID:23023333 (PCH8)
  Authors
Mochida GH, Ganesh VS, de Michelena MI, Dias H, Atabay KD, Kathrein KL, Huang HT, Hill RS, Felie JM, Rakiec D, Gleason D, Hill AD, Malik AN, Barry BJ, Partlow JN, Tan WH, Glader LJ, Barkovich AJ, Dobyns WB, Zon LI, Walsh CA
  Title
CHMP1A encodes an essential regulator of BMI1-INK4A in cerebellar development.
  Journal
Nat Genet 44:1260-4 (2012)
DOI:10.1038/ng.2425
Reference
PMID:23911318 (PCH9)
  Authors
Akizu N, Cantagrel V, Schroth J, Cai N, Vaux K, McCloskey D, Naviaux RK, Van Vleet J, Fenstermaker AG, Silhavy JL, Scheliga JS, Toyama K, Morisaki H, Sonmez FM, Celep F, Oraby A, Zaki MS, Al-Baradie R, Faqeih EA, Saleh MA, Spencer E, Rosti RO, Scott E, Nickerson E, Gabriel S, Morisaki T, Holmes EW, Gleeson JG
  Title
AMPD2 regulates GTP synthesis and is mutated in a potentially treatable neurodegenerative brainstem disorder.
  Journal
Cell 154:505-17 (2013)
DOI:10.1016/j.cell.2013.07.005
Reference
PMID:24766809 (PCH10)
  Authors
Karaca E, Weitzer S, Pehlivan D, Shiraishi H, Gogakos T, Hanada T, Jhangiani SN, Wiszniewski W, Withers M, Campbell IM, Erdin S, Isikay S, Franco LM, Gonzaga-Jauregui C, Gambin T, Gelowani V, Hunter JV, Yesil G, Koparir E, Yilmaz S, Brown M, Briskin D, Hafner M, Morozov P, Farazi TA, Bernreuther C, Glatzel M, Trattnig S, Friske J, Kronnerwetter C, Bainbridge MN, Gezdirici A, Seven M, Muzny DM, Boerwinkle E, Ozen M, Clausen T, Tuschl T, Yuksel A, Hess A, Gibbs RA, Martinez J, Penninger JM, Lupski JR
  Title
Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function.
  Journal
Cell 157:636-50 (2014)
DOI:10.1016/j.cell.2014.02.058
Reference
PMID:28823707 (PCH11)
  Authors
Ivanova EL, Mau-Them FT, Riazuddin S, Kahrizi K, Laugel V, Schaefer E, de Saint Martin A, Runge K, Iqbal Z, Spitz MA, Laura M, Drouot N, Gerard B, Deleuze JF, de Brouwer APM, Razzaq A, Dollfus H, Assir MZ, Nitchke P, Hinckelmann MV, Ropers H, Riazuddin S, Najmabadi H, van Bokhoven H, Chelly J
  Title
Homozygous Truncating Variants in TBC1D23 Cause Pontocerebellar Hypoplasia and Alter Cortical Development.
  Journal
Am J Hum Genet 101:428-440 (2017)
DOI:10.1016/j.ajhg.2017.07.010
Reference
PMID:30089828 (PCH12)
  Authors
van Dijk T, Ferdinandusse S, Ruiter JPN, Alders M, Mathijssen IB, Parboosingh JS, Innes AM, Meijers-Heijboer H, Poll-The BT, Bernier FP, Wanders RJA, Lamont RE, Baas F
  Title
Biallelic loss of function variants in COASY cause prenatal onset pontocerebellar hypoplasia, microcephaly, and arthrogryposis.
  Journal
Eur J Hum Genet 26:1752-1758 (2018)
DOI:10.1038/s41431-018-0233-0
Reference
PMID:31207318 (PCH13)
  Authors
Uwineza A, Caberg JH, Hitayezu J, Wenric S, Mutesa L, Vial Y, Drunat S, Passemard S, Verloes A, El Ghouzzi V, Bours V
  Title
VPS51 biallelic variants cause microcephaly with brain malformations: A confirmatory report.
  Journal
Eur J Med Genet 62:103704 (2019)
DOI:10.1016/j.ejmg.2019.103704
Reference
PMID:33220177 (PCH14 PCH15)
  Authors
Chai G, Webb A, Li C, Antaki D, Lee S, Breuss MW, Lang N, Stanley V, Anzenberg P, Yang X, Marshall T, Gaffney P, Wierenga KJ, Chung BH, Tsang MH, Pais LS, Lovgren AK, VanNoy GE, Rehm HL, Mirzaa G, Leon E, Diaz J, Neumann A, Kalverda AP, Manfield IW, Parry DA, Logan CV, Johnson CA, Bonthron DT, Valleley EMA, Issa MY, Abdel-Ghafar SF, Abdel-Hamid MS, Jennings P, Zaki MS, Sheridan E, Gleeson JG
  Title
Mutations in Spliceosomal Genes PPIL1 and PRP17 Cause Neurodegenerative Pontocerebellar Hypoplasia with Microcephaly.
  Journal
Neuron 109:241-256.e9 (2021)
DOI:10.1016/j.neuron.2020.10.035
Reference
PMID:33168985 (PCH16)
  Authors
Appelhof B, Wagner M, Hoefele J, Heinze A, Roser T, Koch-Hogrebe M, Roosendaal SD, Dehghani M, Mehrjardi MYV, Torti E, Houlden H, Maroofian R, Rajabi F, Sticht H, Baas F, Wieczorek D, Jamra RA
  Title
Pontocerebellar hypoplasia due to bi-allelic variants in MINPP1.
  Journal
Eur J Hum Genet 29:411-421 (2021)
DOI:10.1038/s41431-020-00749-x
Reference
PMID:35390279 (PCH17)
  Authors
Coolen M, Altin N, Rajamani K, Pereira E, Siquier-Pernet K, Puig Lombardi E, Moreno N, Barcia G, Yvert M, Laquerriere A, Pouliet A, Nitschke P, Boddaert N, Rausell A, Razavi F, Afenjar A, Billette de Villemeur T, Al-Maawali A, Al-Thihli K, Baptista J, Beleza-Meireles A, Garel C, Legendre M, Gelot A, Burglen L, Moutton S, Cantagrel V
  Title
Recessive PRDM13 mutations cause fatal perinatal brainstem dysfunction with cerebellar hypoplasia and disrupt Purkinje cell differentiation.
  Journal
Am J Hum Genet 109:909-927 (2022)
DOI:10.1016/j.ajhg.2022.03.010
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