KEGG   PATHWAY: aau00020
Entry
aau00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paenarthrobacter aurescens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aau00020  Citrate cycle (TCA cycle)
aau00020

Module
aau_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aau00020]
aau_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aau00020]
aau_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aau00020]
aau_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aau00020]
aau_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aau00020]
aau_M00982  Methylcitrate cycle [PATH:aau00020]
Other DBs
GO: 0006099
Organism
Paenarthrobacter aurescens [GN:aau]
Gene
AAur_0568  [KO:K00239] [EC:1.3.5.1]
AAur_0570  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AAur_0832  [KO:K01596] [EC:4.1.1.32]
AAur_1044  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
AAur_1045  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AAur_1201  [KO:K00031] [EC:1.1.1.42]
AAur_1244  sdhB; succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AAur_1245  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AAur_1246  [KO:K00242]
AAur_1247  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AAur_1299  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AAur_1660  gltA; citrate synthase [KO:K01659] [EC:2.3.3.5]
AAur_1686  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AAur_1755  [KO:K00627] [EC:2.3.1.12]
AAur_1756  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AAur_1789  acnA; aconitate hydratase 1 [KO:K27802]
AAur_1912  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AAur_2433  [KO:K00163] [EC:1.2.4.1]
AAur_2520  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
AAur_2635  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AAur_2795  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
AAur_3391  [KO:K00163] [EC:1.2.4.1]
AAur_pTC10073  pyc; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AAur_pTC20150  gltA; citrate synthase [KO:K01659] [EC:2.3.3.5]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aau00010  Glycolysis / Gluconeogenesis
aau00053  Ascorbate and aldarate metabolism
aau00061  Fatty acid biosynthesis
aau00071  Fatty acid degradation
aau00190  Oxidative phosphorylation
aau00220  Arginine biosynthesis
aau00250  Alanine, aspartate and glutamate metabolism
aau00280  Valine, leucine and isoleucine degradation
aau00350  Tyrosine metabolism
aau00470  D-Amino acid metabolism
aau00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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