KEGG   PATHWAY: abq00020
Entry
abq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Azospirillum brasilense Az39
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
abq00020  Citrate cycle (TCA cycle)
abq00020

Module
abq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:abq00020]
abq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:abq00020]
abq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:abq00020]
abq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:abq00020]
abq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:abq00020]
Other DBs
GO: 0006099
Organism
Azospirillum brasilense Az39 [GN:abq]
Gene
ABAZ39_24420  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ABAZ39_08140  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ABAZ39_01095  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ABAZ39_22880  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ABAZ39_04080  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ABAZ39_04110  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ABAZ39_30380  hypothetical protein [KO:K00164] [EC:1.2.4.2]
ABAZ39_12220  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
ABAZ39_12225  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ABAZ39_02060  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABAZ39_17550  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABAZ39_13480  2-oxoglutarate synthase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ABAZ39_13485  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ABAZ39_07605  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
ABAZ39_12215  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
ABAZ39_29990  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ABAZ39_07610  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ABAZ39_12210  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ABAZ39_29995  succinate--CoA ligase [KO:K01903] [EC:6.2.1.5]
ABAZ39_26615  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
ABAZ39_12105  fumarate reductase [KO:K00239] [EC:1.3.5.1]
ABAZ39_12115  succinate dehydrogenase [KO:K00241]
ABAZ39_12110  succinate dehydrogenase [KO:K00242]
ABAZ39_06945  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ABAZ39_09420  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ABAZ39_12205  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ABAZ39_15115  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
ABAZ39_26865  transketolase [KO:K00163] [EC:1.2.4.1]
ABAZ39_17565  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
ABAZ39_17560  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
ABAZ39_29055  hypothetical protein [KO:K00627] [EC:2.3.1.12]
ABAZ39_10670  acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
ABAZ39_17555  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
abq00010  Glycolysis / Gluconeogenesis
abq00053  Ascorbate and aldarate metabolism
abq00061  Fatty acid biosynthesis
abq00071  Fatty acid degradation
abq00190  Oxidative phosphorylation
abq00220  Arginine biosynthesis
abq00250  Alanine, aspartate and glutamate metabolism
abq00280  Valine, leucine and isoleucine degradation
abq00350  Tyrosine metabolism
abq00470  D-Amino acid metabolism
abq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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