KEGG   PATHWAY: adau00020
Entry
adau00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alicyclobacillus dauci
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
adau00020  Citrate cycle (TCA cycle)
adau00020

Module
adau_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:adau00020]
adau_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:adau00020]
adau_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:adau00020]
adau_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:adau00020]
Other DBs
GO: 0006099
Organism
Alicyclobacillus dauci [GN:adau]
Gene
NZD86_08625  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
NZD86_06820  citrate synthase [KO:K01659] [EC:2.3.3.5]
NZD86_16875  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
NZD86_05500  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NZD86_20575  isocitrate/isopropylmalate family dehydrogenase [KO:K00030] [EC:1.1.1.41]
NZD86_07815  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NZD86_07820  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NZD86_20540  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NZD86_14065  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NZD86_14070  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NZD86_04270  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
NZD86_10810  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NZD86_10815  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NZD86_10805  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
NZD86_19560  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NZD86_16245  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
NZD86_05505  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NZD86_08385  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NZD86_05135  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NZD86_12665  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NZD86_20525  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
NZD86_12670  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
NZD86_20530  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
NZD86_12675  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
NZD86_20535  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
adau00010  Glycolysis / Gluconeogenesis
adau00053  Ascorbate and aldarate metabolism
adau00061  Fatty acid biosynthesis
adau00071  Fatty acid degradation
adau00190  Oxidative phosphorylation
adau00220  Arginine biosynthesis
adau00250  Alanine, aspartate and glutamate metabolism
adau00280  Valine, leucine and isoleucine degradation
adau00350  Tyrosine metabolism
adau00470  D-Amino acid metabolism
adau00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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