KEGG   PATHWAY: aly00030
Entry
aly00030                    Pathway                                
Name
Pentose phosphate pathway - Arabidopsis lyrata (lyrate rockcress)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aly00030  Pentose phosphate pathway
aly00030

Module
aly_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:aly00030]
aly_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:aly00030]
aly_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:aly00030]
aly_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:aly00030]
Other DBs
GO: 0006098
Organism
Arabidopsis lyrata (lyrate rockcress) [GN:aly]
Gene
9305781  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
9301563  glucose-6-phosphate isomerase, cytosolic [KO:K01810] [EC:5.3.1.9]
9313103  glucose-6-phosphate 1-dehydrogenase, cytoplasmic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
9328567  LOW QUALITY PROTEIN: glucose-6-phosphate 1-dehydrogenase 4, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
9306520  glucose-6-phosphate 1-dehydrogenase 1, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
9326778  glucose-6-phosphate 1-dehydrogenase 3, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
9307617  glucose-6-phosphate 1-dehydrogenase 2, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
9304711  glucose-6-phosphate 1-dehydrogenase, cytoplasmic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
9326080  probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
9313737  probable 6-phosphogluconolactonase 2 [KO:K01057] [EC:3.1.1.31]
9310263  probable 6-phosphogluconolactonase 4 [KO:K01057] [EC:3.1.1.31]
9310264  probable 6-phosphogluconolactonase 3 [KO:K01057] [EC:3.1.1.31]
9310262  probable 6-phosphogluconolactonase 5, chloroplastic [KO:K01057] [EC:3.1.1.31]
9318292  6-phosphogluconate dehydrogenase, decarboxylating 3 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
9304654  6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
9323978  6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
9320323  LOW QUALITY PROTEIN: ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
9322470  ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
9324027  ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
9300808  ribulose-phosphate 3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
9309039  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
9314416  transketolase-1, chloroplastic [KO:K00615] [EC:2.2.1.1]
9309679  uncharacterized protein LOC9309679 [KO:K00616] [EC:2.2.1.2]
9325985  uncharacterized protein LOC9325985 [KO:K00616] [EC:2.2.1.2]
110228369  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
9323409  probable ribose-5-phosphate isomerase 1 [KO:K01807] [EC:5.3.1.6]
9301435  probable ribose-5-phosphate isomerase 4, chloroplastic [KO:K01807] [EC:5.3.1.6]
9320537  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
9326269  uncharacterized protein LOC9326269 [KO:K00852] [EC:2.7.1.15]
9301951  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
9323391  probable phosphoglucomutase, cytoplasmic 2 [KO:K01835] [EC:5.4.2.2]
9326631  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
9315616  ribose-phosphate pyrophosphokinase 1, chloroplastic [KO:K00948] [EC:2.7.6.1]
9327050  ribose-phosphate pyrophosphokinase 2, chloroplastic [KO:K00948] [EC:2.7.6.1]
9316191  ribose-phosphate pyrophosphokinase 5, chloroplastic [KO:K00948] [EC:2.7.6.1]
9314809  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
9322143  uncharacterized protein LOC9322143 isoform X2 [KO:K00851] [EC:2.7.1.12]
110227833  fructose-bisphosphate aldolase 4, cytosolic [KO:K01623] [EC:4.1.2.13]
9317511  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
9312801  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
9303634  fructose-bisphosphate aldolase 5, cytosolic [KO:K01623] [EC:4.1.2.13]
9305677  fructose-bisphosphate aldolase 7, cytosolic [KO:K01623] [EC:4.1.2.13]
9302900  fructose-bisphosphate aldolase 2, chloroplastic [KO:K01623] [EC:4.1.2.13]
9312243  fructose-bisphosphate aldolase 8, cytosolic [KO:K01623] [EC:4.1.2.13]
9314611  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
9330022  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
9314022  fructose-1,6-bisphosphatase 1, chloroplastic [KO:K03841] [EC:3.1.3.11]
9300972  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
9305518  ATP-dependent 6-phosphofructokinase 1 [KO:K00850] [EC:2.7.1.11]
9303645  LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
9305311  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
9314686  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
110224918  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
9302518  ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X2 [KO:K00850] [EC:2.7.1.11]
9302233  ATP-dependent 6-phosphofructokinase 7 [KO:K00850] [EC:2.7.1.11]
9325154  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 [KO:K00895] [EC:2.7.1.90]
9328731  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1 [KO:K00895] [EC:2.7.1.90]
9310861  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 2 [KO:K00895] [EC:2.7.1.90]
9329202  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1 [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
aly00010  Glycolysis / Gluconeogenesis
aly00040  Pentose and glucuronate interconversions
aly00052  Galactose metabolism
aly00230  Purine metabolism
aly00240  Pyrimidine metabolism
aly00340  Histidine metabolism
aly00630  Glyoxylate and dicarboxylate metabolism
aly00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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