KEGG   PATHWAY: aly00630
Entry
aly00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Arabidopsis lyrata (lyrate rockcress)
Class
Metabolism; Carbohydrate metabolism
Pathway map
aly00630  Glyoxylate and dicarboxylate metabolism
aly00630

Module
aly_M00012  Glyoxylate cycle [PATH:aly00630]
aly_M00532  Photorespiration [PATH:aly00630]
aly_M00621  Glycine cleavage system [PATH:aly00630]
Other DBs
GO: 0046487 0043648
Organism
Arabidopsis lyrata (lyrate rockcress) [GN:aly]
Gene
9319383  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
9304552  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
9319100  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
9309187  malate synthase [KO:K01638] [EC:2.3.3.9]
9302237  malate dehydrogenase 3, cytoplasmic [KO:K00025] [EC:1.1.1.37]
9299740  malate dehydrogenase 2, cytoplasmic [KO:K00025] [EC:1.1.1.37]
9328278  malate dehydrogenase 1, cytoplasmic [KO:K00025] [EC:1.1.1.37]
9314701  malate dehydrogenase 1, peroxisomal isoform X1 [KO:K00026] [EC:1.1.1.37]
9318975  malate dehydrogenase 2, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
9309482  malate dehydrogenase 2, glyoxysomal [KO:K00026] [EC:1.1.1.37]
9311912  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
9330491  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
9314306  citrate synthase 2, peroxisomal [KO:K01647] [EC:2.3.3.1]
9312603  citrate synthase 5, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
9316174  citrate synthase 4, mitochondrial [KO:K01647] [EC:2.3.3.1]
9317939  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
9314305  LOW QUALITY PROTEIN: citrate synthase 1, peroxisomal [KO:K01647] [EC:2.3.3.1]
110229838  aconitate hydratase 3, mitochondrial [KO:K01681] [EC:4.2.1.3]
9319771  aconitate hydratase 3, mitochondrial [KO:K01681] [EC:4.2.1.3]
9303604  aconitate hydratase 2, mitochondrial [KO:K01681] [EC:4.2.1.3]
9305129  LOW QUALITY PROTEIN: aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
9306509  aconitate hydratase 3, mitochondrial [KO:K01681] [EC:4.2.1.3]
9299401  probable acetyl-CoA acetyltransferase, cytosolic 2 isoform X1 [KO:K00626] [EC:2.3.1.9]
9299957  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
9321110  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
110230512  peroxisomal (S)-2-hydroxy-acid oxidase GLO2 isoform X1 [KO:K11517] [EC:1.1.3.15]
9318936  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
110229874  peroxisomal (S)-2-hydroxy-acid oxidase GLO3 isoform X1 [KO:K11517] [EC:1.1.3.15]
9306123  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 isoform X1 [KO:K11517] [EC:1.1.3.15]
9325253  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
9299068  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
9326457  catalase-3 isoform X1 [KO:K03781] [EC:1.11.1.6]
110224639  catalase-1 [KO:K03781] [EC:1.11.1.6]
9305180  catalase-2 [KO:K03781] [EC:1.11.1.6]
9323920  glyoxylate/hydroxypyruvate reductase A HPR2 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
9326003  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
9316256  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
9321794  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
9329023  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
9324707  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
9306556  phosphoglycolate phosphatase 1B, chloroplastic isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
9299396  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
32283048  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
110226891  ribulose bisphosphate carboxylase small chain 1B, chloroplastic [KO:K01602] [EC:4.1.1.39]
9306912  ribulose bisphosphate carboxylase small chain 1B, chloroplastic [KO:K01602] [EC:4.1.1.39]
9304848  ribulose bisphosphate carboxylase small chain 1B, chloroplastic [KO:K01602] [EC:4.1.1.39]
9324639  ribulose bisphosphate carboxylase small chain 1A, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
9321937  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
9329338  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
9323376  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
9309205  ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial isoform X1 [KO:K00284] [EC:1.4.7.1]
9315983  ferredoxin-dependent glutamate synthase 2, chloroplastic [KO:K00284] [EC:1.4.7.1]
9304500  glutamine synthetase, chloroplastic/mitochondrial [KO:K01915] [EC:6.3.1.2]
9306616  glutamine synthetase cytosolic isozyme 1-1 isoform X1 [KO:K01915] [EC:6.3.1.2]
9327498  glutamine synthetase cytosolic isozyme 1-5 [KO:K01915] [EC:6.3.1.2]
9307795  glutamine synthetase cytosolic isozyme 1-4 isoform X1 [KO:K01915] [EC:6.3.1.2]
9324551  glutamine synthetase cytosolic isozyme 1-2 isoform X1 [KO:K01915] [EC:6.3.1.2]
9319155  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
9306422  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
9304401  serine hydroxymethyltransferase 5 isoform X2 [KO:K00600] [EC:2.1.2.1]
9303311  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
9302994  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
9308303  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
9329268  serine hydroxymethyltransferase 6 [KO:K00600] [EC:2.1.2.1]
9327283  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
9316808  glycine dehydrogenase (decarboxylating) 2, mitochondrial [KO:K00281] [EC:1.4.4.2]
9303284  glycine dehydrogenase (decarboxylating) 1, mitochondrial [KO:K00281] [EC:1.4.4.2]
9325963  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
9319102  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
9321261  dihydrolipoyl dehydrogenase 2, mitochondrial [KO:K00382] [EC:1.8.1.4]
9306249  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
9330152  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
9317460  glycine cleavage system H protein 1, mitochondrial [KO:K02437]
9317442  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
9327055  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
9323897  D-glycerate 3-kinase, chloroplastic isoform X2 [KO:K15918] [EC:2.7.1.31]
9309760  formate dehydrogenase, chloroplastic/mitochondrial [KO:K00122] [EC:1.17.1.9]
9299421  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
9306180  formyltetrahydrofolate deformylase 2, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
110226250  uncharacterized protein LOC110226250 isoform X1 [KO:K01455] [EC:3.5.1.49]
9303013  uncharacterized protein LOC9303013 [KO:K01455] [EC:3.5.1.49]
9312005  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
aly00010  Glycolysis / Gluconeogenesis
aly00020  Citrate cycle (TCA cycle)
aly00030  Pentose phosphate pathway
aly00053  Ascorbate and aldarate metabolism
aly00071  Fatty acid degradation
aly00230  Purine metabolism
aly00250  Alanine, aspartate and glutamate metabolism
aly00260  Glycine, serine and threonine metabolism
aly00620  Pyruvate metabolism
aly00710  Carbon fixation by Calvin cycle
aly00750  Vitamin B6 metabolism
aly00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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