KEGG   PATHWAY: aly00230
Entry
aly00230                    Pathway                                
Name
Purine metabolism - Arabidopsis lyrata (lyrate rockcress)
Class
Metabolism; Nucleotide metabolism
Pathway map
aly00230  Purine metabolism
aly00230

Module
aly_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:aly00230]
aly_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:aly00230]
aly_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:aly00230]
aly_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:aly00230]
aly_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:aly00230]
Other DBs
GO: 0006163 0042278
Organism
Arabidopsis lyrata (lyrate rockcress) [GN:aly]
Gene
9303721  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
9319708  nudix hydrolase 6 isoform X1 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
110226384  nudix hydrolase 10 isoform X1 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
9301184  nudix hydrolase 2 isoform X1 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
9299393  nudix hydrolase 7 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
9316033  nudix hydrolase 23, chloroplastic [KO:K18453] [EC:3.6.1.13 3.6.1.18]
9308707  nudix hydrolase 14, chloroplastic [KO:K18447] [EC:3.6.1.21]
9301951  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
9323391  probable phosphoglucomutase, cytoplasmic 2 [KO:K01835] [EC:5.4.2.2]
9326631  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
9315616  ribose-phosphate pyrophosphokinase 1, chloroplastic [KO:K00948] [EC:2.7.6.1]
9327050  ribose-phosphate pyrophosphokinase 2, chloroplastic [KO:K00948] [EC:2.7.6.1]
9316191  ribose-phosphate pyrophosphokinase 5, chloroplastic [KO:K00948] [EC:2.7.6.1]
9320072  amidophosphoribosyltransferase 1, chloroplastic [KO:K00764] [EC:2.4.2.14]
110226214  amidophosphoribosyltransferase 2, chloroplastic [KO:K00764] [EC:2.4.2.14]
9304941  amidophosphoribosyltransferase 3, chloroplastic [KO:K00764] [EC:2.4.2.14]
9328591  phosphoribosylamine--glycine ligase, chloroplastic [KO:K01945] [EC:6.3.4.13]
9323375  phosphoribosylglycinamide formyltransferase, chloroplastic isoform X2 [KO:K00601] [EC:2.1.2.2]
9327187  phosphoribosylglycinamide formyltransferase, chloroplastic [KO:K00601] [EC:2.1.2.2]
9323599  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [KO:K01952] [EC:6.3.5.3]
9312350  phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic [KO:K01933] [EC:6.3.3.1]
9317611  phosphoribosylaminoimidazole carboxylase, chloroplastic [KO:K11808] [EC:4.1.1.21]
9319351  phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic isoform X1 [KO:K01923] [EC:6.3.2.6]
9321624  LOW QUALITY PROTEIN: uncharacterized protein LOC9321624 [KO:K01756] [EC:4.3.2.2]
9304063  uncharacterized protein LOC9304063 [KO:K01756] [EC:4.3.2.2]
9317438  uncharacterized protein LOC9317438 isoform X1 [KO:K00602] [EC:2.1.2.3 3.5.4.10]
9309566  adenine phosphoribosyltransferase 5 [KO:K00759] [EC:2.4.2.7]
9303833  adenine phosphoribosyltransferase 3 [KO:K00759] [EC:2.4.2.7]
9323912  adenine phosphoribosyltransferase 2 isoform X1 [KO:K00759] [EC:2.4.2.7]
9329530  adenine phosphoribosyltransferase 1, chloroplastic isoform X1 [KO:K00759] [EC:2.4.2.7]
9324961  uncharacterized protein LOC9324961 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
9306343  uncharacterized protein LOC9306343 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
9323450  uncharacterized protein LOC9323450 [KO:K00760] [EC:2.4.2.8]
9323852  inosine-5'-monophosphate dehydrogenase 1 isoform X1 [KO:K00088] [EC:1.1.1.205]
9328966  inosine-5'-monophosphate dehydrogenase 2 [KO:K00088] [EC:1.1.1.205]
9300921  nucleoside diphosphate kinase II, chloroplastic [KO:K00940] [EC:2.7.4.6]
9310729  nucleoside diphosphate kinase III, chloroplastic/mitochondrial [KO:K00940] [EC:2.7.4.6]
9308510  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
9312922  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
9326107  probable apyrase 3 isoform X1 [KO:K01510] [EC:3.6.1.5]
9328859  probable apyrase 4 isoform X1 [KO:K01510] [EC:3.6.1.5]
110224709  LOW QUALITY PROTEIN: probable apyrase 5 [KO:K01510] [EC:3.6.1.5]
9309949  apyrase 2 [KO:K14641] [EC:3.6.1.5]
9320493  apyrase 1 [KO:K14641] [EC:3.6.1.5]
9311223  inosine triphosphate pyrophosphatase isoform X1 [KO:K01519] [EC:3.6.1.66]
9306428  inosine triphosphate pyrophosphatase [KO:K01519] [EC:3.6.1.66]
9305190  xanthine dehydrogenase 1 isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
9310998  xanthine dehydrogenase 1 isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
9329662  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
9322460  uncharacterized protein LOC9322460 [KO:K01951] [EC:6.3.5.2]
9320630  guanylate kinase 3, chloroplastic [KO:K00942] [EC:2.7.4.8]
9314230  guanylate kinase 2 [KO:K00942] [EC:2.7.4.8]
9317873  guanylate kinase 1 [KO:K00942] [EC:2.7.4.8]
9314640  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
9324272  LOW QUALITY PROTEIN: ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
9302917  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
9313084  ribonucleoside-diphosphate reductase small chain C [KO:K10808] [EC:1.17.4.1]
9321638  ribonucleoside-diphosphate reductase small chain A [KO:K10808] [EC:1.17.4.1]
9306735  ribonucleoside-diphosphate reductase small chain B [KO:K10808] [EC:1.17.4.1]
9316599  HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
9326735  HD domain-containing protein 2 homolog [KO:K07023] [EC:3.1.3.89]
9308918  putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [KO:K00951] [EC:2.7.6.5]
9321280  probable GTP diphosphokinase CRSH, chloroplastic [KO:K00951] [EC:2.7.6.5]
9321072  probable GTP diphosphokinase RSH2, chloroplastic [KO:K00951] [EC:2.7.6.5]
9327854  probable GTP diphosphokinase RSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
9311188  phytosulfokine receptor 1 [KO:K27625] [EC:2.7.11.1 4.6.1.2]
9312495  adenylosuccinate synthetase, chloroplastic [KO:K01939] [EC:6.3.4.4]
9317641  AMP deaminase [KO:K01490] [EC:3.5.4.6]
110229009  AMP deaminase-like [KO:K01490] [EC:3.5.4.6]
9318704  adenosine kinase 1 [KO:K00856] [EC:2.7.1.20]
9307094  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
9326285  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
9311883  LOW QUALITY PROTEIN: probable adenylate kinase 6, chloroplastic [KO:K00939] [EC:2.7.4.3]
9320324  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
9299903  adenylate kinase 2, chloroplastic [KO:K00939] [EC:2.7.4.3]
9302625  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
9304480  adenylate kinase 5, chloroplastic isoform X1 [KO:K00939] [EC:2.7.4.3]
9317566  adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
9317707  probable adenylate kinase 6, chloroplastic [KO:K00939] [EC:2.7.4.3]
9301865  adenylate kinase 3 [KO:K00939] [EC:2.7.4.3]
110228748  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
9302851  uncharacterized protein LOC9302851 isoform X2 [KO:K06928] [EC:3.6.1.15]
9303468  ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
9300634  bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT [KO:K01522] [EC:3.6.1.29]
9304334  ATP-sulfurylase 3, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
9319450  ATP sulfurylase 1, chloroplastic isoform X2 [KO:K13811] [EC:2.7.7.4 2.7.1.25]
9299710  ATP sulfurylase 4, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
9326421  ATP sulfurylase 2 [KO:K13811] [EC:2.7.7.4 2.7.1.25]
9319922  adenylyl-sulfate kinase 1, chloroplastic [KO:K00860] [EC:2.7.1.25]
9302772  adenylyl-sulfate kinase 4, chloroplastic [KO:K00860] [EC:2.7.1.25]
9320483  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
9302967  adenylyl-sulfate kinase 2, chloroplastic [KO:K00860] [EC:2.7.1.25]
9330632  uricase [KO:K00365] [EC:1.7.3.3]
9300633  uric acid degradation bifunctional protein TTL isoform X2 [KO:K13484] [EC:3.5.2.17 4.1.1.97]
9310891  allantoinase [KO:K01466] [EC:3.5.2.5]
9306021  allantoate deiminase [KO:K02083] [EC:3.5.3.9]
9304160  (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
9301486  ureidoglycolate hydrolase [KO:K18151] [EC:3.5.1.116]
9324672  urease [KO:K01427] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
aly00030  Pentose phosphate pathway
aly00220  Arginine biosynthesis
aly00250  Alanine, aspartate and glutamate metabolism
aly00260  Glycine, serine and threonine metabolism
aly00340  Histidine metabolism
aly00630  Glyoxylate and dicarboxylate metabolism
aly00730  Thiamine metabolism
aly00740  Riboflavin metabolism
aly00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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