KEGG   PATHWAY: aly00010
Entry
aly00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Arabidopsis lyrata (lyrate rockcress)
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aly00010  Glycolysis / Gluconeogenesis
aly00010

Module
aly_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:aly00010]
aly_M00002  Glycolysis, core module involving three-carbon compounds [PATH:aly00010]
aly_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aly00010]
aly_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aly00010]
Other DBs
GO: 0006096 0006094
Organism
Arabidopsis lyrata (lyrate rockcress) [GN:aly]
Gene
9321420  hexokinase-4 [KO:K00844] [EC:2.7.1.1]
9305522  hexokinase-1 [KO:K00844] [EC:2.7.1.1]
9330315  hexokinase-3 [KO:K00844] [EC:2.7.1.1]
9322084  hexokinase-2 [KO:K00844] [EC:2.7.1.1]
9330134  hexokinase-like 1 protein [KO:K00844] [EC:2.7.1.1]
9303001  probable hexokinase-like 2 protein [KO:K00844] [EC:2.7.1.1]
9305781  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
9301563  glucose-6-phosphate isomerase, cytosolic [KO:K01810] [EC:5.3.1.9]
9305518  ATP-dependent 6-phosphofructokinase 1 [KO:K00850] [EC:2.7.1.11]
9303645  LOW QUALITY PROTEIN: ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
9305311  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
9314686  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
110224918  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
9302518  ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X2 [KO:K00850] [EC:2.7.1.11]
9302233  ATP-dependent 6-phosphofructokinase 7 [KO:K00850] [EC:2.7.1.11]
9325154  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 2 [KO:K00895] [EC:2.7.1.90]
9328731  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 1 [KO:K00895] [EC:2.7.1.90]
9310861  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta 2 [KO:K00895] [EC:2.7.1.90]
9329202  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha 1 [KO:K00895] [EC:2.7.1.90]
9330022  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
9314022  fructose-1,6-bisphosphatase 1, chloroplastic [KO:K03841] [EC:3.1.3.11]
9300972  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
110227833  fructose-bisphosphate aldolase 4, cytosolic [KO:K01623] [EC:4.1.2.13]
9317511  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
9312801  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
9303634  fructose-bisphosphate aldolase 5, cytosolic [KO:K01623] [EC:4.1.2.13]
9305677  fructose-bisphosphate aldolase 7, cytosolic [KO:K01623] [EC:4.1.2.13]
9302900  fructose-bisphosphate aldolase 2, chloroplastic [KO:K01623] [EC:4.1.2.13]
9312243  fructose-bisphosphate aldolase 8, cytosolic [KO:K01623] [EC:4.1.2.13]
9314611  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
9314102  triosephosphate isomerase, cytosolic [KO:K01803] [EC:5.3.1.1]
9314604  triosephosphate isomerase, chloroplastic [KO:K01803] [EC:5.3.1.1]
9326068  glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [KO:K00134] [EC:1.2.1.12]
9325314  glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic [KO:K00134] [EC:1.2.1.12]
9318398  glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [KO:K00134] [EC:1.2.1.12]
9328964  glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [KO:K00134] [EC:1.2.1.12]
9318856  phosphoglycerate kinase 1, chloroplastic [KO:K00927] [EC:2.7.2.3]
9325316  phosphoglycerate kinase 3, cytosolic [KO:K00927] [EC:2.7.2.3]
9330626  phosphoglycerate kinase 2, chloroplastic [KO:K00927] [EC:2.7.2.3]
9323779  uncharacterized protein LOC9323779 [KO:K01834] [EC:5.4.2.11]
9326559  uncharacterized protein LOC9326559 [KO:K01834] [EC:5.4.2.11]
9313818  phosphoglycerate mutase-like protein 4 [KO:K15634] [EC:5.4.2.11]
9309204  metal-independent phosphoserine phosphatase [KO:K15634] [EC:5.4.2.11]
9318640  probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 [KO:K15633] [EC:5.4.2.12]
9325834  2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 [KO:K15633] [EC:5.4.2.12]
9325023  enolase 1, chloroplastic [KO:K01689] [EC:4.2.1.11]
9315682  bifunctional enolase 2/transcriptional activator [KO:K01689] [EC:4.2.1.11]
9312244  bifunctional enolase 2/transcriptional activator [KO:K01689] [EC:4.2.1.11]
9317125  cytosolic enolase 3 [KO:K01689] [EC:4.2.1.11]
9313721  plastidial pyruvate kinase 4, chloroplastic isoform X1 [KO:K00873] [EC:2.7.1.40]
9321600  plastidial pyruvate kinase 1, chloroplastic [KO:K00873] [EC:2.7.1.40]
9312405  LOW QUALITY PROTEIN: probable pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
9329785  plastidial pyruvate kinase 3, chloroplastic [KO:K00873] [EC:2.7.1.40]
9315684  pyruvate kinase 1, cytosolic [KO:K00873] [EC:2.7.1.40]
9307418  pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
9303639  probable pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
9300528  probable pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
9312389  pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
9312246  pyruvate kinase 1, cytosolic [KO:K00873] [EC:2.7.1.40]
9318395  probable pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
9302016  plastidial pyruvate kinase 2 [KO:K00873] [EC:2.7.1.40]
9300937  pyruvate kinase, cytosolic isozyme [KO:K00873] [EC:2.7.1.40]
9306304  pyruvate, phosphate dikinase 1, chloroplastic isoform X1 [KO:K01006] [EC:2.7.9.1]
9322716  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
9329391  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [KO:K00161] [EC:1.2.4.1]
9325449  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
9317413  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
9326914  pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [KO:K00162] [EC:1.2.4.1]
9300156  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
9313917  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
9321064  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
9330544  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
9313003  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
9327165  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
9319102  dihydrolipoyl dehydrogenase 1, chloroplastic [KO:K00382] [EC:1.8.1.4]
9321261  dihydrolipoyl dehydrogenase 2, mitochondrial [KO:K00382] [EC:1.8.1.4]
9306249  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
9330152  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
9306184  L-lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
9307001  pyruvate decarboxylase 4 [KO:K01568] [EC:4.1.1.1]
9303277  pyruvate decarboxylase 1 [KO:K01568] [EC:4.1.1.1]
9307000  pyruvate decarboxylase 3 [KO:K01568] [EC:4.1.1.1]
9302143  pyruvate decarboxylase 2 [KO:K01568] [EC:4.1.1.1]
9301619  alcohol dehydrogenase-like 7 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
9303864  LOW QUALITY PROTEIN: alcohol dehydrogenase-like 5 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
9299700  alcohol dehydrogenase class-3 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
9326576  alcohol dehydrogenase-like 2 isoform X1 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
9329291  alcohol dehydrogenase-like 1 [KO:K00121] [EC:1.1.1.284 1.1.1.1]
9323734  alcohol dehydrogenase class-P [KO:K18857] [EC:1.1.1.1]
9310288  alcohol dehydrogenase-like 6 [KO:K00001] [EC:1.1.1.1]
9322396  alcohol dehydrogenase-like 4 [KO:K00001] [EC:1.1.1.1]
9323929  alcohol dehydrogenase-like 4 [KO:K00001] [EC:1.1.1.1]
9329802  alcohol dehydrogenase-like 3 [KO:K00001] [EC:1.1.1.1]
9299043  aldo-keto reductase family 4 member C10 [KO:K00002] [EC:1.1.1.2]
9306975  aldose reductase isoform X1 [KO:K00002] [EC:1.1.1.2]
110228858  aldo-keto reductase family 4 member C10 [KO:K00002] [EC:1.1.1.2]
9313658  aldehyde dehydrogenase family 2 member B4, mitochondrial [KO:K00128] [EC:1.2.1.3]
9323192  aldehyde dehydrogenase family 3 member H1 [KO:K00128] [EC:1.2.1.3]
9303098  aldehyde dehydrogenase family 3 member F1 [KO:K00128] [EC:1.2.1.3]
9305234  aldehyde dehydrogenase family 3 member I1, chloroplastic [KO:K00128] [EC:1.2.1.3]
9326659  aldehyde dehydrogenase family 2 member B7, mitochondrial [KO:K00128] [EC:1.2.1.3]
9327349  LOW QUALITY PROTEIN: aldehyde dehydrogenase family 3 member H1 [KO:K00128] [EC:1.2.1.3]
9327851  aldehyde dehydrogenase family 7 member B4 [KO:K14085] [EC:1.2.1.31 1.2.1.8 1.2.1.3]
9304552  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [KO:K01895] [EC:6.2.1.1]
9319100  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
9321301  aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
9318257  aldose 1-epimerase isoform X1 [KO:K01785] [EC:5.1.3.3]
9307720  aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
9313643  aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
9301951  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
9323391  probable phosphoglucomutase, cytoplasmic 2 [KO:K01835] [EC:5.4.2.2]
9326631  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
9312693  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
9305838  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
9305716  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
9309739  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
9320340  putative glucose-6-phosphate 1-epimerase isoform X2 [KO:K01792] [EC:5.1.3.15]
9300588  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
9301136  putative glucose-6-phosphate 1-epimerase [KO:K01792] [EC:5.1.3.15]
9328594  multiple inositol polyphosphate phosphatase 1 [KO:K03103] [EC:3.1.3.62 3.1.3.80]
9314809  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
9301045  phosphoenolpyruvate carboxykinase (ATP) isoform X1 [KO:K01610] [EC:4.1.1.49]
9305033  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aly00020  Citrate cycle (TCA cycle)
aly00030  Pentose phosphate pathway
aly00500  Starch and sucrose metabolism
aly00620  Pyruvate metabolism
aly00640  Propanoate metabolism
aly00710  Carbon fixation in photosynthetic organisms
KO pathway
ko00010   
LinkDB

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