KEGG   PATHWAY: aten03420
Entry
aten03420                   Pathway                                
Name
Nucleotide excision repair - Actinia tenebrosa (Australian red waratah sea anemone)
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
aten03420  Nucleotide excision repair
aten03420

Other DBs
GO: 0006289
Organism
Actinia tenebrosa (Australian red waratah sea anemone) [GN:aten]
Gene
116286498  [KO:K02327] [EC:2.7.7.7]
116286674  [KO:K10756]
116286963  [KO:K10570]
116287078  [KO:K10610]
116288471  [KO:K03506] [EC:2.7.7.7]
116288726  [KO:K02328]
116289648  [KO:K03505]
116290297  [KO:K10848] [EC:3.1.-.-]
116290557  [KO:K10847]
116290573  [KO:K21987]
116290834  [KO:K04802]
116291507  [KO:K03868] [EC:2.3.2.32]
116292099  [KO:K10846]
116293212  [KO:K10740]
116293291  [KO:K10756]
116293938  [KO:K03016]
116293979  [KO:K03143]
116294099  [KO:K10755]
116294902  [KO:K06634]
116295263  [KO:K10838]
116295526  [KO:K03006] [EC:2.7.7.6]
116295714  [KO:K10755]
116296903  [KO:K03011]
116297211  [KO:K03010] [EC:2.7.7.6]
116297559  [KO:K03014]
116298336  [KO:K10844] [EC:5.6.2.3]
116298505  [KO:K10839]
116299309  [KO:K10841]
116299592  [KO:K10842]
116300163  [KO:K03017]
116300693  [KO:K03144]
116300879  [KO:K10843] [EC:5.6.2.4]
116302507  [KO:K02324] [EC:2.7.7.7]
116303521  [KO:K10847]
116303625  [KO:K03008]
116303746  [KO:K10739]
116303804  [KO:K03015]
116304953  [KO:K02326] [EC:2.7.7.7]
116305982  [KO:K03012]
116306127  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
116306280  [KO:K02325] [EC:2.7.7.7]
116306302  [KO:K23720]
116306310  [KO:K07466]
116306578  [KO:K03141]
116307527  [KO:K10609]
116307909  [KO:K10754]
116307989  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
116308381  [KO:K03013]
116308683  [KO:K10849]
116308769  [KO:K03142]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
aten03020  RNA polymerase
aten04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   

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