KEGG   PATHWAY: azl00020
Entry
azl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Azospirillum sp. B510
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
azl00020  Citrate cycle (TCA cycle)
azl00020

Module
azl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:azl00020]
azl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:azl00020]
azl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:azl00020]
azl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:azl00020]
azl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:azl00020]
Other DBs
GO: 0006099
Organism
Azospirillum sp. B510 [GN:azl]
Gene
AZL_000620  pepCK; phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
AZL_001730  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
AZL_001740  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
AZL_001750  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AZL_001760  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AZL_009060  pdhC; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
AZL_015170  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AZL_015190  pdhC; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
AZL_015200  pdhB; pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
AZL_015210  pdhA; pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
AZL_016090  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AZL_016830  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AZL_016900  idh; isocitrate dehydrogenase (NAD+) [KO:K00031] [EC:1.1.1.42]
AZL_017510  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AZL_024440  acnA; aconitate hydratase 1 [KO:K27802]
AZL_025020  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AZL_025750  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AZL_025760  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
AZL_025770  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
AZL_025780  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AZL_025790  sucB; 2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
AZL_a03540  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
AZL_a03550  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
AZL_a07580  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AZL_a07630  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
AZL_b00670  pdhC; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
AZL_c04410  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AZL_c04520  nifJ; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
AZL_d02620  [KO:K01647] [EC:2.3.3.1]
AZL_d02810  [KO:K18118] [EC:2.8.3.18]
AZL_e03790  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
azl00010  Glycolysis / Gluconeogenesis
azl00053  Ascorbate and aldarate metabolism
azl00061  Fatty acid biosynthesis
azl00071  Fatty acid degradation
azl00190  Oxidative phosphorylation
azl00220  Arginine biosynthesis
azl00250  Alanine, aspartate and glutamate metabolism
azl00280  Valine, leucine and isoleucine degradation
azl00350  Tyrosine metabolism
azl00470  D-Amino acid metabolism
azl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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