KEGG   PATHWAY: bard00020
Entry
bard00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus arachidis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bard00020  Citrate cycle (TCA cycle)
bard00020

Module
bard_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bard00020]
bard_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bard00020]
bard_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bard00020]
bard_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bard00020]
bard_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bard00020]
Other DBs
GO: 0006099
Organism
Bacillus arachidis [GN:bard]
Gene
QRY57_12885  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
QRY57_22590  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
QRY57_17735  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
QRY57_22585  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QRY57_08005  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QRY57_08000  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QRY57_19620  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QRY57_20615  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QRY57_18535  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
QRY57_18530  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
QRY57_18945  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QRY57_18950  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QRY57_22200  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QRY57_22195  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QRY57_22205  sdhC; succinate dehydrogenase cytochrome B558 [KO:K00241]
QRY57_04125  fumA; class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
QRY57_10075  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QRY57_22580  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QRY57_16325  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
QRY57_19505  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
QRY57_23485  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
QRY57_19635  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QRY57_19630  pdhB; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
QRY57_19625  pdhC; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bard00010  Glycolysis / Gluconeogenesis
bard00053  Ascorbate and aldarate metabolism
bard00061  Fatty acid biosynthesis
bard00071  Fatty acid degradation
bard00190  Oxidative phosphorylation
bard00220  Arginine biosynthesis
bard00250  Alanine, aspartate and glutamate metabolism
bard00280  Valine, leucine and isoleucine degradation
bard00350  Tyrosine metabolism
bard00470  D-Amino acid metabolism
bard00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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