KEGG   PATHWAY: bcal00020
Entry
bcal00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus caldolyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcal00020  Citrate cycle (TCA cycle)
bcal00020

Module
bcal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcal00020]
bcal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcal00020]
bcal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcal00020]
bcal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcal00020]
bcal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcal00020]
Other DBs
GO: 0006099
Organism
Bacillus caldolyticus [GN:bcal]
Gene
CWI35_03205  [KO:K00116] [EC:1.1.5.4]
CWI35_03480  acnA; aconitate hydratase AcnA [KO:K27802]
CWI35_03715  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CWI35_03720  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CWI35_04215  [KO:K01902] [EC:6.2.1.5]
CWI35_04220  [KO:K01903] [EC:6.2.1.5]
CWI35_04825  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CWI35_04920  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CWI35_04925  [KO:K00627] [EC:2.3.1.12]
CWI35_04930  [KO:K00162] [EC:1.2.4.1]
CWI35_04935  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CWI35_05105  [KO:K00658] [EC:2.3.1.61]
CWI35_05110  [KO:K00164] [EC:1.2.4.2]
CWI35_07950  [KO:K01676] [EC:4.2.1.2]
CWI35_08995  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CWI35_11760  [KO:K00627] [EC:2.3.1.12]
CWI35_11765  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CWI35_13825  [KO:K18118] [EC:2.8.3.18]
CWI35_13985  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CWI35_14520  [KO:K01659] [EC:2.3.3.5]
CWI35_14525  [KO:K00031] [EC:1.1.1.42]
CWI35_14530  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CWI35_14880  [KO:K00241]
CWI35_14885  [KO:K00239] [EC:1.3.5.1]
CWI35_14890  [KO:K00240] [EC:1.3.5.1]
CWI35_16520  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcal00010  Glycolysis / Gluconeogenesis
bcal00053  Ascorbate and aldarate metabolism
bcal00061  Fatty acid biosynthesis
bcal00071  Fatty acid degradation
bcal00190  Oxidative phosphorylation
bcal00220  Arginine biosynthesis
bcal00250  Alanine, aspartate and glutamate metabolism
bcal00280  Valine, leucine and isoleucine degradation
bcal00350  Tyrosine metabolism
bcal00470  D-Amino acid metabolism
bcal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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