KEGG   PATHWAY: bgy00020
Entry
bgy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus glycinifermentans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgy00020  Citrate cycle (TCA cycle)
bgy00020

Module
bgy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bgy00020]
bgy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bgy00020]
bgy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bgy00020]
bgy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bgy00020]
bgy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bgy00020]
Other DBs
GO: 0006099
Organism
Bacillus glycinifermentans [GN:bgy]
Gene
BGLY_1041  citA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
BGLY_4500  mmgD; citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
BGLY_3449  citZ; Citrate synthase 2 [KO:K01659] [EC:2.3.3.5]
BGLY_2261  citB; Aconitate hydratase A [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BGLY_3448  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BGLY_2511  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BGLY_2510  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BGLY_1671  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BGLY_2861  bfmBC; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BGLY_0871  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BGLY_1825  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
BGLY_1824  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
BGLY_3378  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BGLY_3377  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BGLY_3379  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
BGLY_3880  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BGLY_3447  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BGLY_1695  pyc; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BGLY_3605  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
BGLY_1668  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BGLY_1669  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BGLY_0870  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BGLY_1670  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bgy00010  Glycolysis / Gluconeogenesis
bgy00053  Ascorbate and aldarate metabolism
bgy00061  Fatty acid biosynthesis
bgy00071  Fatty acid degradation
bgy00190  Oxidative phosphorylation
bgy00220  Arginine biosynthesis
bgy00250  Alanine, aspartate and glutamate metabolism
bgy00280  Valine, leucine and isoleucine degradation
bgy00350  Tyrosine metabolism
bgy00470  D-Amino acid metabolism
bgy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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