KEGG   PATHWAY: bgy00240
Entry
bgy00240                    Pathway                                
Name
Pyrimidine metabolism - Bacillus glycinifermentans
Class
Metabolism; Nucleotide metabolism
Pathway map
bgy00240  Pyrimidine metabolism
bgy00240

Module
bgy_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:bgy00240]
bgy_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:bgy00240]
bgy_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:bgy00240]
Other DBs
GO: 0006220 0006213
Organism
Bacillus glycinifermentans [GN:bgy]
Gene
BGLY_1239  carB; carbamoyl phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
BGLY_1766  pyrAB; Carbamoyl-phosphate synthase pyrimidine-specific large chain [KO:K01955] [EC:6.3.5.5]
BGLY_1238  carA; carbamoyl phosphate synthase small subunit [KO:K01956] [EC:6.3.5.5]
BGLY_1765  pyrAA; Carbamoyl-phosphate synthase pyrimidine-specific small chain [KO:K01956] [EC:6.3.5.5]
BGLY_1763  pyrB; Aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
BGLY_1764  pyrC; Dihydroorotase [KO:K01465] [EC:3.5.2.3]
BGLY_1768  pyrD; Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit [KO:K17828] [EC:1.3.1.14]
BGLY_1767  pyrK; Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit [KO:K02823]
BGLY_1770  pyrE; Orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
BGLY_1769  pyrF; Orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
BGLY_1866  pyrH; Uridylate kinase [KO:K09903] [EC:2.7.4.22]
BGLY_2683  ndk; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
BGLY_3262  maf; Septum formation protein Maf [KO:K06287] [EC:3.6.1.-]
BGLY_4368  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
BGLY_2700  cmk; Cytidylate kinase [KO:K00945] [EC:2.7.4.25]
BGLY_3180  udk; Uridine kinase [KO:K00876] [EC:2.7.1.48]
BGLY_3808  5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
BGLY_0838  yfkN; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase protein [KO:K08693] [EC:3.1.4.16 3.1.3.6 3.1.3.5]
BGLY_4339  upp; Uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
BGLY_1761  pyrR; Bifunctional protein PyrR [KO:K02825] [EC:2.4.2.9]
BGLY_2113  hypothetical protein [KO:K09769] [EC:3.1.4.16]
BGLY_4610  pdp; Pyrimidine-nucleoside phosphorylase [KO:K00756] [EC:2.4.2.2]
BGLY_2503  cytidine deaminase [KO:K01489] [EC:3.5.4.5]
BGLY_2986  cytidine deaminase [KO:K01489] [EC:3.5.4.5]
BGLY_4222  anaerobic ribonucleoside triphosphate reductase [KO:K21636] [EC:1.1.98.6]
BGLY_2061  bnrdE; Ribonucleoside-diphosphate reductase nrdEB subunit alpha [KO:K00525] [EC:1.17.4.1]
BGLY_1510  nrdE1; ribonucleotide-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
BGLY_2175  nrdE2; Ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
BGLY_2176  nrdF2; Ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
BGLY_1512  nrdF1; Ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
BGLY_2063  yosP; SPBc2 prophage-derived ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
BGLY_0018  dck; Deoxyadenosine/deoxycytidine kinase [KO:K15519] [EC:2.7.1.76 2.7.1.74]
BGLY_3019  comEB; ComE operon protein 2 [KO:K01493] [EC:3.5.4.12]
BGLY_0032  tmk; Thymidylate kinase [KO:K00943] [EC:2.7.4.9]
BGLY_2218  yncF2; putative deoxyuridine 5'-triphosphate nucleotidohydrolase YncF [KO:K01520] [EC:3.6.1.23]
BGLY_1513  dUTP diphosphatase [KO:K01520] [EC:3.6.1.23]
BGLY_2068  yncF1; putative deoxyuridine 5'-triphosphate nucleotidohydrolase YncF [KO:K01520] [EC:3.6.1.23]
BGLY_4358  tdk; Thymidine kinase [KO:K00857] [EC:2.7.1.21]
BGLY_2242  thyA; Thymidylate synthase [KO:K00560] [EC:2.1.1.45]
BGLY_2074  thymidylate synthase [KO:K00560] [EC:2.1.1.45]
BGLY_1515  prophage LambdaBa01, thymidylate synthase-complementing protein [KO:K03465] [EC:2.1.1.148]
BGLY_1708  amidase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
bgy00030  Pentose phosphate pathway
bgy00220  Arginine biosynthesis
bgy00250  Alanine, aspartate and glutamate metabolism
bgy00280  Valine, leucine and isoleucine degradation
bgy00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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