KEGG   PATHWAY: bgy00030
Entry
bgy00030                    Pathway                                
Name
Pentose phosphate pathway - Bacillus glycinifermentans
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgy00030  Pentose phosphate pathway
bgy00030

Module
bgy_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bgy00030]
bgy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bgy00030]
bgy_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bgy00030]
bgy_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bgy00030]
bgy_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:bgy00030]
bgy_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:bgy00030]
Other DBs
GO: 0006098
Organism
Bacillus glycinifermentans [GN:bgy]
Gene
BGLY_3703  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
BGLY_2832  zwf; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BGLY_4463  hypothetical protein [KO:K07404] [EC:3.1.1.31]
BGLY_4674  gntZ; 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BGLY_2841  gndA; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BGLY_1796  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BGLY_2251  tkt; Transketolase [KO:K00615] [EC:2.2.1.1]
BGLY_4363  tal; Transaldolase [KO:K00616] [EC:2.2.1.2]
BGLY_4342  ywlF; putative sugar phosphate isomerase YwlF [KO:K01808] [EC:5.3.1.6]
BGLY_3090  hxlA; 3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
BGLY_3089  hxlB; 6-phospho 3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
BGLY_4612  deoC2; Deoxyribose-phosphate aldolase 2 [KO:K01619] [EC:4.1.2.4]
BGLY_4240  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
BGLY_2765  deoB; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
BGLY_1024  pgcA; Alpha phosphoglucomutase PgcA [KO:K01835] [EC:5.4.2.2]
BGLY_0059  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
BGLY_4224  kdgA; 2-keto-3-deoxygluconate-6-phosphate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BGLY_4531  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BGLY_0339  hypothetical protein [KO:K00034] [EC:1.1.1.47]
BGLY_2840  gdh; glucose-1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
BGLY_4112  yvcT; 2-ketogluconate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BGLY_4672  gntK; Gluconokinase [KO:K25031] [EC:2.7.1.12]
BGLY_4225  kdgK; 2-keto-3-deoxygluconate kinase [KO:K00874] [EC:2.7.1.45]
BGLY_4530  2-keto-3-deoxygluconate kinase [KO:K00874] [EC:2.7.1.45]
BGLY_4364  fbaA; putative fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
BGLY_4361  glpX; Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
BGLY_3454  pfkA; ATP-dependent 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
bgy00010  Glycolysis / Gluconeogenesis
bgy00040  Pentose and glucuronate interconversions
bgy00052  Galactose metabolism
bgy00230  Purine metabolism
bgy00240  Pyrimidine metabolism
bgy00340  Histidine metabolism
bgy00630  Glyoxylate and dicarboxylate metabolism
bgy00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

DBGET integrated database retrieval system