KEGG   PATHWAY: bmj00020
Entry
bmj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia multivorans ATCC 17616 (Tohoku)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bmj00020  Citrate cycle (TCA cycle)
bmj00020

Module
bmj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bmj00020]
bmj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bmj00020]
bmj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bmj00020]
bmj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bmj00020]
bmj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bmj00020]
Other DBs
GO: 0006099
Organism
Burkholderia multivorans ATCC 17616 (Tohoku) [GN:bmj]
Gene
BMULJ_02499  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
BMULJ_03869  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BMULJ_03858  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BMULJ_03368  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BMULJ_02490  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BMULJ_02489  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BMULJ_01493  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BMULJ_01494  sucB; 2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
BMULJ_01495  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMULJ_02119  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMULJ_04552  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMULJ_02605  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
BMULJ_02606  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
BMULJ_04044  ach1; acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
BMULJ_05685  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BMULJ_03866  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BMULJ_05998  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BMULJ_05747  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BMULJ_05686  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BMULJ_03867  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BMULJ_05683  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
BMULJ_03864  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
BMULJ_05684  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BMULJ_03865  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BMULJ_02176  fumA; class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BMULJ_01026  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BMULJ_03862  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BMULJ_04326  pckA; GTP-dependent phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BMULJ_02121  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BMULJ_02120  pdhC; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
BMULJ_01807  pdhC; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bmj00010  Glycolysis / Gluconeogenesis
bmj00053  Ascorbate and aldarate metabolism
bmj00061  Fatty acid biosynthesis
bmj00071  Fatty acid degradation
bmj00190  Oxidative phosphorylation
bmj00220  Arginine biosynthesis
bmj00250  Alanine, aspartate and glutamate metabolism
bmj00280  Valine, leucine and isoleucine degradation
bmj00350  Tyrosine metabolism
bmj00470  D-Amino acid metabolism
bmj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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