KEGG   PATHWAY: bpec03430
Entry
bpec03430                   Pathway                                
Name
Mismatch repair - Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
bpec03430  Mismatch repair
bpec03430

Other DBs
GO: 0006298
Organism
Boleophthalmus pectinirostris (great blue-spotted mudskipper) [GN:bpec]
Gene
110155021  rfc5; replication factor C subunit 5 isoform X1 [KO:K10756]
110155450  mlh3; DNA mismatch repair protein Mlh3 [KO:K08739]
110157016  msh6; DNA mismatch repair protein Msh6 [KO:K08737]
110158158  exo1; exonuclease 1 [KO:K10746] [EC:3.1.-.-]
110158217  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
110158459  [KO:K07466]
110158531  rfc3; replication factor C subunit 3 [KO:K10756]
110159660  pms2; mismatch repair endonuclease PMS2 [KO:K10858]
110161241  rfc4; replication factor C subunit 4 [KO:K10755]
110161244  rpa3; replication protein A 14 kDa subunit [KO:K10740]
110161739  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
110162826  [KO:K10755]
110162827  [KO:K10755]
110163620  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
110165351  rfc1; replication factor C subunit 1 [KO:K10754]
110165781  pcna; proliferating cell nuclear antigen [KO:K04802]
110167625  pold4; DNA polymerase delta subunit 4 [KO:K03505]
110168108  mlh1; DNA mismatch repair protein Mlh1 [KO:K08734]
110169819  pold2; DNA polymerase delta subunit 2 [KO:K02328]
110174257  rpa2; replication protein A 32 kDa subunit [KO:K10739]
110174586  msh2; DNA mismatch repair protein Msh2 [KO:K08735]
110175118  lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
110175640  msh3; LOW QUALITY PROTEIN: DNA mismatch repair protein Msh3 [KO:K08736]
110175831  pold3; LOW QUALITY PROTEIN: DNA polymerase delta subunit 3 [KO:K03504]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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