KEGG   PATHWAY: bpf00020
Entry
bpf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alkalihalophilus pseudofirmus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpf00020  Citrate cycle (TCA cycle)
bpf00020

Module
bpf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpf00020]
bpf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpf00020]
bpf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpf00020]
bpf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpf00020]
bpf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpf00020]
Other DBs
GO: 0006099
Organism
Alkalihalophilus pseudofirmus [GN:bpf]
Gene
BpOF4_00250  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BpOF4_00255  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BpOF4_00940  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BpOF4_01065  pdhD; dihydrolipoamide dehydrogenase E3 [KO:K00382] [EC:1.8.1.4]
BpOF4_01070  pdhC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BpOF4_01075  pdhB; pyruvate dehydrogenase E1 (lipoamide) beta subunit [KO:K00162] [EC:1.2.4.1]
BpOF4_01080  pdhA; pyruvate dehydrogenase E1 (lipoamide) alpha subunit [KO:K00161] [EC:1.2.4.1]
BpOF4_01425  bfmBC; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BpOF4_03110  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BpOF4_03115  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BpOF4_03120  sdhC; succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
BpOF4_03355  mdhA; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BpOF4_03360  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BpOF4_03365  citZ; citrate synthase type 2 [KO:K01659] [EC:2.3.3.5]
BpOF4_04150  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
BpOF4_07745  mqoA; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BpOF4_10680  fumA; fumarate hydratase class I (fumarase) [KO:K01676] [EC:4.2.1.2]
BpOF4_12510  mdhA2; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BpOF4_14095  citG; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BpOF4_18920  odhB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BpOF4_18925  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BpOF4_19280  citB; aconitate hydratase [KO:K27802]
BpOF4_19535  porB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BpOF4_19540  porA; ferredoxin oxidoreductase,alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BpOF4_20079  pdhD2; dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase E3 [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpf00010  Glycolysis / Gluconeogenesis
bpf00053  Ascorbate and aldarate metabolism
bpf00061  Fatty acid biosynthesis
bpf00071  Fatty acid degradation
bpf00190  Oxidative phosphorylation
bpf00220  Arginine biosynthesis
bpf00250  Alanine, aspartate and glutamate metabolism
bpf00280  Valine, leucine and isoleucine degradation
bpf00350  Tyrosine metabolism
bpf00470  D-Amino acid metabolism
bpf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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