KEGG   PATHWAY: bsia00020
Entry
bsia00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus siamensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsia00020  Citrate cycle (TCA cycle)
bsia00020

Module
bsia_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bsia00020]
bsia_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsia00020]
bsia_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsia00020]
bsia_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsia00020]
bsia_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsia00020]
Other DBs
GO: 0006099
Organism
Bacillus siamensis [GN:bsia]
Gene
CWD84_09740  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
CWD84_16920  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CWD84_06355  citrate synthase [KO:K01659] [EC:2.3.3.5]
CWD84_12030  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CWD84_06360  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CWD84_11430  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CWD84_11435  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CWD84_09780  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CWD84_14015  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CWD84_17915  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CWD84_13260  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CWD84_13265  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CWD84_06690  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CWD84_06695  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CWD84_06685  succinate dehydrogenase [KO:K00241]
CWD84_04035  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CWD84_06365  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CWD84_13875  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CWD84_05595  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CWD84_14030  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CWD84_14025  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CWD84_14020  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
CWD84_17920  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bsia00010  Glycolysis / Gluconeogenesis
bsia00053  Ascorbate and aldarate metabolism
bsia00061  Fatty acid biosynthesis
bsia00071  Fatty acid degradation
bsia00190  Oxidative phosphorylation
bsia00220  Arginine biosynthesis
bsia00250  Alanine, aspartate and glutamate metabolism
bsia00280  Valine, leucine and isoleucine degradation
bsia00350  Tyrosine metabolism
bsia00470  D-Amino acid metabolism
bsia00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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