KEGG   PATHWAY: btc00020
Entry
btc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus thuringiensis serovar chinensis CT-43
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btc00020  Citrate cycle (TCA cycle)
btc00020

Module
btc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:btc00020]
btc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btc00020]
btc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btc00020]
btc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btc00020]
btc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btc00020]
btc_M00982  Methylcitrate cycle [PATH:btc00020]
Other DBs
GO: 0006099
Organism
Bacillus thuringiensis serovar chinensis CT-43 [GN:btc]
Gene
CT43_CH0410  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CT43_CH1191  odhB; dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
CT43_CH1192  sucA; alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
CT43_CH1645  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CT43_CH1724  [KO:K18118] [EC:2.8.3.18]
CT43_CH2248  mmgD; citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
CT43_CH2763  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CT43_CH2764  acoC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
CT43_CH2960  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CT43_CH3562  acnA; aconitate hydratase [KO:K27802]
CT43_CH3716  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CT43_CH3717  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CT43_CH3835  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
CT43_CH3836  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
CT43_CH3953  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CT43_CH3975  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CT43_CH3976  pdhC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
CT43_CH3977  pdhB; pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
CT43_CH3978  pdhA; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
CT43_CH4176  bfmbC; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CT43_CH4535  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CT43_CH4536  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CT43_CH4537  sdhC; succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
CT43_CH4612  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CT43_CH4613  citC; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CT43_CH4614  citZ; methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
CT43_CH4788  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btc00010  Glycolysis / Gluconeogenesis
btc00053  Ascorbate and aldarate metabolism
btc00061  Fatty acid biosynthesis
btc00071  Fatty acid degradation
btc00190  Oxidative phosphorylation
btc00220  Arginine biosynthesis
btc00250  Alanine, aspartate and glutamate metabolism
btc00280  Valine, leucine and isoleucine degradation
btc00350  Tyrosine metabolism
btc00470  D-Amino acid metabolism
btc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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