PATHWAY: bub00470
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Entry
bub00470 Pathway
Name
D-Amino acid metabolism - Burkholderia ubonensis
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
bub00470
D-Amino acid metabolism
Ortholog table
Module
bub_M00948
Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:
bub00470
]
Other DBs
GO:
0046416
Organism
Burkholderia ubonensis [GN:
bub
]
Gene
BW23_4881
alr; alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
BW23_2959
alr; alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
BW23_1993
aminotransferase class IV family protein [KO:
K00824
] [EC:
2.6.1.21
]
BW23_1184
D-alanine--D-alanine ligase family protein [KO:
K01921
] [EC:
6.3.2.4
]
BW23_2773
aspartate racemase family protein [KO:
K25316
] [EC:
5.1.1.10
]
BW23_3375
glsA; glutaminase A [KO:
K01425
] [EC:
3.5.1.2
]
BW23_2670
murI; glutamate racemase [KO:
K01776
] [EC:
5.1.1.3
]
BW23_6268
asp/Glu/Hydantoin racemase family protein [KO:
K01776
] [EC:
5.1.1.3
]
BW23_3336
murI; glutamate racemase [KO:
K01776
] [EC:
5.1.1.3
]
BW23_1188
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [KO:
K01925
] [EC:
6.3.2.9
]
BW23_1800
dapF; diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
BW23_3314
lysA; diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
BW23_6330
hypothetical protein [KO:
K01586
] [EC:
4.1.1.20
]
BW23_5157
proline racemase family protein [KO:
K01777
] [EC:
5.1.1.4
]
BW23_4939
4-hydroxyproline epimerase [KO:
K12658
] [EC:
5.1.1.8
]
BW23_4942
pyridine nucleotide-disulfide oxidoreductase family protein [KO:
K22549
] [EC:1.5.99.-]
BW23_4940
pyridine nucleotide-disulfide oxidoreductase family protein [KO:
K21061
] [EC:1.5.99.-]
BW23_4941
2Fe-2S iron-sulfur cluster binding domain protein [KO:
K22550
]
BW23_4938
dihydrodipicolinate synthetase family protein [KO:
K21062
] [EC:
3.5.4.22
]
BW23_3754
aldehyde dehydrogenase family protein [KO:
K13877
] [EC:
1.2.1.26
]
BW23_4936
aldehyde dehydrogenase family protein [KO:
K13877
] [EC:
1.2.1.26
]
BW23_4355
aldehyde dehydrogenase family protein [KO:
K13877
] [EC:
1.2.1.26
]
BW23_669
ketopantoate reductase PanE/ApbA family protein [KO:
K00285
] [EC:
1.4.5.1
]
BW23_5482
ketopantoate reductase PanE/ApbA family protein [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
bub00010
Glycolysis / Gluconeogenesis
bub00020
Citrate cycle (TCA cycle)
bub00250
Alanine, aspartate and glutamate metabolism
bub00260
Glycine, serine and threonine metabolism
bub00270
Cysteine and methionine metabolism
bub00300
Lysine biosynthesis
bub00310
Lysine degradation
bub00330
Arginine and proline metabolism
bub00340
Histidine metabolism
bub00360
Phenylalanine metabolism
bub00550
Peptidoglycan biosynthesis
bub00620
Pyruvate metabolism
KO pathway
ko00470
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