KEGG   PATHWAY: bxe00030
Entry
bxe00030                    Pathway                                
Name
Pentose phosphate pathway - Paraburkholderia xenovorans LB400
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bxe00030  Pentose phosphate pathway
bxe00030

Module
bxe_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bxe00030]
bxe_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bxe00030]
bxe_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bxe00030]
bxe_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bxe00030]
bxe_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:bxe00030]
Other DBs
GO: 0006098
Organism
Paraburkholderia xenovorans LB400 [GN:bxe]
Gene
Bxe_A2287  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Bxe_B0215  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Bxe_B1764  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Bxe_A3452  glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Bxe_C0539  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
Bxe_A3453  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
Bxe_A3304  Hypothetical protein [KO:K07404] [EC:3.1.1.31]
Bxe_B2210  6-phosphogluconate dehydrogenase (decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Bxe_B1341  6-phosphogluconate dehydrogenase (decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Bxe_B2446  ribulose-5-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Bxe_A0463  ribulose-5-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Bxe_B1309  transketolase [KO:K00615] [EC:2.2.1.1]
Bxe_B2699  transketolase subunit B [KO:K00615] [EC:2.2.1.1]
Bxe_B2448  transketolase [KO:K00615] [EC:2.2.1.1]
Bxe_A0565  transketolase [KO:K00615] [EC:2.2.1.1]
Bxe_A3318  transaldolase [KO:K00616] [EC:2.2.1.2]
Bxe_A2538  ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
Bxe_B1345  Fructose-6-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
Bxe_C1275  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
Bxe_B1399  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
Bxe_B0576  putative ribokinase [KO:K00852] [EC:2.7.1.15]
Bxe_C1272  putative ribokinase [KO:K00852] [EC:2.7.1.15]
Bxe_C1282  putative ribokinase [KO:K00852] [EC:2.7.1.15]
Bxe_B1401  Ribokinase [KO:K00852] [EC:2.7.1.15]
Bxe_B1518  Phosphoglucomutase, alpha-D-glucosephosphate-specific [KO:K01835] [EC:5.4.2.2]
Bxe_C0545  Phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
Bxe_A3701  phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Bxe_B2176  Putative phosphonate metabolism protein [KO:K05774] [EC:2.7.4.23]
Bxe_A4133  Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Bxe_A0589  6-phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
Bxe_A0590  2-keto-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Bxe_B0443  glucose 1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
Bxe_C0173  quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
Bxe_A1505  quinoprotein glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
Bxe_B0611  gluconolactonase [KO:K01053] [EC:3.1.1.17]
Bxe_C0969  gluconolactonase [KO:K01053] [EC:3.1.1.17]
Bxe_B2153  gluconolactonase [KO:K01053] [EC:3.1.1.17]
Bxe_C0230  Putative dehydrogenase [KO:K06151] [EC:1.1.99.3]
Bxe_A4095  Putative gluconate dehydrogenase [KO:K06151] [EC:1.1.99.3]
Bxe_A4094  Conserved hypothetical protein [KO:K06152] [EC:1.1.99.3]
Bxe_C0229  Conserved hypothetical protein [KO:K06152] [EC:1.1.99.3]
Bxe_A1982  Putative 2-ketogluconate 6-phosphate reductase, TkrA [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Bxe_A1055  Putative 2-ketogluconate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Bxe_A0592  gluconate kinase, SKI family [KO:K00851] [EC:2.7.1.12]
Bxe_A1980  Putative sugar (2-ketogluconate) kinase, PfkB family [KO:K00874] [EC:2.7.1.45]
Bxe_A2336  sugar kinase, ribokinase family [KO:K00874] [EC:2.7.1.45]
Bxe_B1334  fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
Bxe_A0691  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
Bxe_B2447  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
Bxe_A0920  D-fructose 1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Bxe_B2450  D-fructose 1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
bxe00010  Glycolysis / Gluconeogenesis
bxe00040  Pentose and glucuronate interconversions
bxe00052  Galactose metabolism
bxe00230  Purine metabolism
bxe00240  Pyrimidine metabolism
bxe00340  Histidine metabolism
bxe00630  Glyoxylate and dicarboxylate metabolism
bxe00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

DBGET integrated database retrieval system