KEGG   PATHWAY: byi00020
Entry
byi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia sp. YI23
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
byi00020  Citrate cycle (TCA cycle)
byi00020

Module
byi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:byi00020]
byi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:byi00020]
byi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:byi00020]
byi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:byi00020]
byi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:byi00020]
Other DBs
GO: 0006099
Organism
Burkholderia sp. YI23 [GN:byi]
Gene
BYI23_D008740  citrate synthase [KO:K01647] [EC:2.3.3.1]
BYI23_C005420  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
BYI23_C006780  citrate synthase [KO:K01647] [EC:2.3.3.1]
BYI23_B011820  citrate synthase I [KO:K01647] [EC:2.3.3.1]
BYI23_B011940  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BYI23_C008500  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BYI23_A005350  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BYI23_B013880  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BYI23_B002030  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BYI23_A016190  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
BYI23_A016180  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BYI23_D010890  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BYI23_B014740  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
BYI23_B007170  putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BYI23_A016170  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BYI23_A009060  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BYI23_A004530  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BYI23_B010430  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BYI23_A004520  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
BYI23_B010420  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
BYI23_B008460  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
BYI23_C009820  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BYI23_B011850  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BYI23_C009810  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BYI23_B011840  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BYI23_C009840  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BYI23_B011870  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BYI23_C009830  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BYI23_B011860  succinate dehydrogenase subunit D [KO:K00242]
BYI23_A009310  tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit [KO:K01676] [EC:4.2.1.2]
BYI23_A019430  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BYI23_B002440  fumarate lyase [KO:K01679] [EC:4.2.1.2]
BYI23_B011890  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BYI23_A000150  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
BYI23_B003530  2-oxoacid dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
BYI23_A009040  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
BYI23_D011430  branched-chain alpha-keto acid dehydrogenase [KO:K00627] [EC:2.3.1.12]
BYI23_A009050  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
byi00010  Glycolysis / Gluconeogenesis
byi00053  Ascorbate and aldarate metabolism
byi00061  Fatty acid biosynthesis
byi00071  Fatty acid degradation
byi00190  Oxidative phosphorylation
byi00220  Arginine biosynthesis
byi00250  Alanine, aspartate and glutamate metabolism
byi00280  Valine, leucine and isoleucine degradation
byi00350  Tyrosine metabolism
byi00470  D-Amino acid metabolism
byi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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