PATHWAY: byi00470
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Entry
byi00470 Pathway
Name
D-Amino acid metabolism - Burkholderia sp. YI23
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
byi00470
D-Amino acid metabolism
Ortholog table
Module
byi_M00948
Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:
byi00470
]
Other DBs
GO:
0046416
Organism
Burkholderia sp. YI23 [GN:
byi
]
Gene
BYI23_A012820
alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
BYI23_A010390
alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
BYI23_D013300
alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
BYI23_A001610
aminotransferase class IV [KO:
K00824
] [EC:
2.6.1.21
]
BYI23_A022870
D-alanine/D-alanine ligase [KO:
K01921
] [EC:
6.3.2.4
]
BYI23_A009290
glutamate racemase [KO:
K01776
] [EC:
5.1.1.3
]
BYI23_A022910
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [KO:
K01925
] [EC:
6.3.2.9
]
BYI23_D004730
hypothetical protein [KO:
K26272
] [EC:
2.3.1.312
]
BYI23_C004470
aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
BYI23_A002850
alanine racemase domain protein [KO:
K01753
] [EC:
4.3.1.18
]
BYI23_D007720
metal-activated pyridoxal protein [KO:
K19967
] [EC:
4.1.2.42
]
BYI23_A027170
diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
BYI23_A024100
diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
BYI23_C013410
ornithine cyclodeaminase/mu-crystallin [KO:
K19744
] [EC:
1.4.1.25
]
BYI23_C008410
proline racemase [KO:
K01777
] [EC:
5.1.1.4
]
BYI23_C013030
proline racemase [KO:
K01777
] [EC:
5.1.1.4
]
BYI23_D009420
Proline racemase [KO:
K01777
] [EC:
5.1.1.4
]
BYI23_B007710
proline racemase [KO:
K12658
] [EC:
5.1.1.8
]
BYI23_C005580
proline racemase [KO:
K12658
] [EC:
5.1.1.8
]
BYI23_D012930
4-hydroxyproline epimerase [KO:
K12658
] [EC:
5.1.1.8
]
BYI23_B007680
oxidoreductase, putative [KO:
K22549
] [EC:1.5.99.-]
BYI23_B007700
FAD dependent oxidoreductase [KO:
K21061
] [EC:1.5.99.-]
BYI23_B007690
ferredoxin [KO:
K22550
]
BYI23_C009190
putative NAD(FAD)-dependent dehydrogenase [KO:
K22550
]
BYI23_B007720
dihydrodipicolinate synthetase [KO:
K21062
] [EC:
3.5.4.22
]
BYI23_B003150
aldehyde dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
BYI23_B002610
aldehyde dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
BYI23_C004050
D-amino acid dehydrogenase small subunit [KO:
K00285
] [EC:
1.4.5.1
]
BYI23_A019670
D-amino acid dehydrogenase small subunit [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
byi00010
Glycolysis / Gluconeogenesis
byi00020
Citrate cycle (TCA cycle)
byi00250
Alanine, aspartate and glutamate metabolism
byi00260
Glycine, serine and threonine metabolism
byi00270
Cysteine and methionine metabolism
byi00300
Lysine biosynthesis
byi00310
Lysine degradation
byi00330
Arginine and proline metabolism
byi00340
Histidine metabolism
byi00360
Phenylalanine metabolism
byi00550
Peptidoglycan biosynthesis
byi00620
Pyruvate metabolism
KO pathway
ko00470
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integrated database retrieval system
