KEGG   PATHWAY: cdx00020
Entry
cdx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium deserti
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cdx00020  Citrate cycle (TCA cycle)
cdx00020

Module
cdx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cdx00020]
cdx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cdx00020]
cdx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cdx00020]
cdx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cdx00020]
cdx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cdx00020]
Other DBs
GO: 0006099
Organism
Corynebacterium deserti [GN:cdx]
Gene
CDES_04175  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
CDES_07405  acn; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CDES_03395  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CDES_05460  odhA; 2-oxoglutarate dehydrogenase E1/E2 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CDES_02040  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDES_11615  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
CDES_11620  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
CDES_11675  cat1; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CDES_02070  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CDES_02075  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CDES_02065  hypothetical protein [KO:K00241]
CDES_04915  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CDES_10830  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CDES_08975  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CDES_03520  pyc; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CDES_12870  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
CDES_10175  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
CDES_10005  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cdx00010  Glycolysis / Gluconeogenesis
cdx00061  Fatty acid biosynthesis
cdx00071  Fatty acid degradation
cdx00190  Oxidative phosphorylation
cdx00220  Arginine biosynthesis
cdx00250  Alanine, aspartate and glutamate metabolism
cdx00280  Valine, leucine and isoleucine degradation
cdx00350  Tyrosine metabolism
cdx00470  D-Amino acid metabolism
cdx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system