KEGG   PATHWAY: cfac00020
Entry
cfac00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium faecale
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfac00020  Citrate cycle (TCA cycle)
cfac00020

Module
cfac_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cfac00020]
cfac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cfac00020]
cfac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfac00020]
cfac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cfac00020]
cfac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfac00020]
cfac_M00982  Methylcitrate cycle [PATH:cfac00020]
Other DBs
GO: 0006099
Organism
Corynebacterium faecale [GN:cfac]
Gene
CFAEC_01525  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CFAEC_01540  [KO:K00241]
CFAEC_01545  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CFAEC_01550  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CFAEC_02115  cat1; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CFAEC_02900  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
CFAEC_03025  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
CFAEC_03040  prpC1; 2-methylcitrate synthase 1 [KO:K01659] [EC:2.3.3.5]
CFAEC_03650  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
CFAEC_04465  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
CFAEC_05415  odhA; 2-oxoglutarate dehydrogenase E1/E2 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CFAEC_07405  acn; Aconitate hydratase [KO:K27802]
CFAEC_08610  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CFAEC_09560  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
CFAEC_09795  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
CFAEC_10495  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CFAEC_11195  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
CFAEC_11200  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
CFAEC_11295  cat2; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CFAEC_12545  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cfac00010  Glycolysis / Gluconeogenesis
cfac00053  Ascorbate and aldarate metabolism
cfac00061  Fatty acid biosynthesis
cfac00071  Fatty acid degradation
cfac00190  Oxidative phosphorylation
cfac00220  Arginine biosynthesis
cfac00250  Alanine, aspartate and glutamate metabolism
cfac00280  Valine, leucine and isoleucine degradation
cfac00350  Tyrosine metabolism
cfac00470  D-Amino acid metabolism
cfac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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