KEGG   PATHWAY: cgob03030
Entry
cgob03030                   Pathway                                
Name
DNA replication - Cottoperca gobio
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
cgob03030  DNA replication
cgob03030

Organism
Cottoperca gobio [GN:cgob]
Gene
115004030  mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
115004818  rfc2; replication factor C subunit 2 [KO:K10755]
115005844  [KO:K02540] [EC:5.6.2.3]
115005922  [KO:K10742] [EC:5.6.2.3 3.1.-.-]
115006423  dna2; LOW QUALITY PROTEIN: DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
115007205  pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
115007424  rfc4; replication factor C subunit 4 [KO:K10755]
115009170  rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
115009570  rfc1; replication factor C subunit 1 [KO:K10754]
115010727  prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
115010838  pold4; DNA polymerase delta subunit 4 [KO:K03505]
115012329  pold1; LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
115012523  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
115013350  pold2; DNA polymerase delta subunit 2 [KO:K02328]
115013533  rfc5; replication factor C subunit 5 [KO:K10756]
115014133  pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
115014144  pcna; proliferating cell nuclear antigen [KO:K04802]
115014290  rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
115014868  pola2; DNA polymerase alpha subunit B [KO:K02321]
115015177  mcm7; LOW QUALITY PROTEIN: DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
115015391  [KO:K10739]
115016010  rpa3; replication protein A 14 kDa subunit [KO:K10740]
115018306  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
115018765  [KO:K07466]
115018852  rfc3; replication factor C subunit 3 [KO:K10756]
115020497  prim2; DNA primase large subunit [KO:K02685]
115020840  rpa2; replication protein A 32 kDa subunit [KO:K10739]
115022231  mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
115022305  lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
115022601  pold3; LOW QUALITY PROTEIN: DNA polymerase delta subunit 3 [KO:K03504]
115022616  [KO:K04799] [EC:3.1.-.-]
115023121  mcm4; DNA replication licensing factor MCM4 isoform X1 [KO:K02212] [EC:5.6.2.3]
115025291  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
115025614  pola1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
115026349  rnaseh2b; ribonuclease H2 subunit B [KO:K10744]
115027457  pole2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
115028333  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
115028513  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
115028966  rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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