KEGG   PATHWAY: cnt00020
Entry
cnt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cedecea neteri SSMD04
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cnt00020  Citrate cycle (TCA cycle)
cnt00020

Module
cnt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cnt00020]
cnt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cnt00020]
cnt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cnt00020]
cnt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cnt00020]
cnt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cnt00020]
Other DBs
GO: 0006099
Organism
Cedecea neteri SSMD04 [GN:cnt]
Gene
JT31_06240  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
JT31_00125  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
JT31_08655  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
JT31_04030  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JT31_06215  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
JT31_06210  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
JT31_08665  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
JT31_06200  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
JT31_06205  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
JT31_06225  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
JT31_06220  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
JT31_06235  sdhC; succinate dehydrogenase [KO:K00241]
JT31_06230  sdhD; succinate dehydrogenase [KO:K00242]
JT31_10440  fumarate reductase [KO:K00244] [EC:1.3.5.1]
JT31_10445  fumarate reductase [KO:K00245] [EC:1.3.5.1]
JT31_10450  fumarate reductase [KO:K00246]
JT31_10455  fumarate reductase [KO:K00247]
JT31_03000  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JT31_07895  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JT31_02995  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JT31_03995  hypothetical protein [KO:K01675] [EC:4.2.1.2]
JT31_14620  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JT31_22345  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
JT31_13885  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
JT31_08675  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
JT31_08670  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
JT31_00370  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cnt00010  Glycolysis / Gluconeogenesis
cnt00053  Ascorbate and aldarate metabolism
cnt00061  Fatty acid biosynthesis
cnt00071  Fatty acid degradation
cnt00190  Oxidative phosphorylation
cnt00220  Arginine biosynthesis
cnt00250  Alanine, aspartate and glutamate metabolism
cnt00280  Valine, leucine and isoleucine degradation
cnt00350  Tyrosine metabolism
cnt00470  D-Amino acid metabolism
cnt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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