KEGG   PATHWAY: cpla00020
Entry
cpla00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chiloscyllium plagiosum (whitespotted bambooshark)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpla00020  Citrate cycle (TCA cycle)
cpla00020

Module
cpla_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cpla00020]
cpla_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpla00020]
Other DBs
GO: 0006099
Organism
Chiloscyllium plagiosum (whitespotted bambooshark) [GN:cpla]
Gene
122543266  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
122539714  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
122562977  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
122542288  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
122541068  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
122551326  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
122558882  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
122547735  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
122549980  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
122542450  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
122547926  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
122541876  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
122553400  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
122563780  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
122554286  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122554937  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122557126  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122559071  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122549321  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
122540256  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
122552702  fh; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
122543869  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
122553139  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
122564157  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122540559  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
122540774  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
122555000  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
122559035  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
122540657  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpla00010  Glycolysis / Gluconeogenesis
cpla00053  Ascorbate and aldarate metabolism
cpla00061  Fatty acid biosynthesis
cpla00062  Fatty acid elongation
cpla00071  Fatty acid degradation
cpla00190  Oxidative phosphorylation
cpla00220  Arginine biosynthesis
cpla00250  Alanine, aspartate and glutamate metabolism
cpla00280  Valine, leucine and isoleucine degradation
cpla00350  Tyrosine metabolism
cpla00470  D-Amino acid metabolism
cpla00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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