KEGG   PATHWAY: daq00040
Entry
daq00040                    Pathway                                
Name
Pentose and glucuronate interconversions - Dickeya aquatica
Class
Metabolism; Carbohydrate metabolism
Pathway map
daq00040  Pentose and glucuronate interconversions
daq00040

Module
daq_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:daq00040]
daq_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:daq00040]
Organism
Dickeya aquatica [GN:daq]
Gene
DAQ1742_01074  pemA; Pectinesterase [KO:K01051] [EC:3.1.1.11]
DAQ1742_04112  pelB; Pectate lyase B precursor [KO:K01728] [EC:4.2.2.2]
DAQ1742_04113  pelC; Pectate lyase C precursor [KO:K01728] [EC:4.2.2.2]
DAQ1742_01076  pelD; Pectate lyase precursor [KO:K01728] [EC:4.2.2.2]
DAQ1742_01077  pelA; Pectate lyase A precursor [KO:K01728] [EC:4.2.2.2]
DAQ1742_02459  pelW; Exopolygalacturonate lyase [KO:K01731] [EC:4.2.2.9]
DAQ1742_04477  pelX; Exopolygalacturonate lyase [KO:K22994] [EC:4.2.2.9]
DAQ1742_02481  ogl; Oligogalacturonate lyase [KO:K01730] [EC:4.2.2.6]
DAQ1742_02456  kdgF; Pectin degradation protein, catalyzes the ketonization of 4,5-unsaturated monouronates derived from pectin degradation [KO:K26933] [EC:4.2.99.25]
DAQ1742_02457  kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [KO:K01815] [EC:5.3.1.17]
DAQ1742_02458  kduD; 2-deoxy-D-gluconate 3-dehydrogenase [KO:K00065] [EC:1.1.1.127]
DAQ1742_00614  uxaC; Uronate isomerase [KO:K01812] [EC:5.3.1.12]
DAQ1742_00615  uxaB; Altronate oxidoreductase [KO:K00041] [EC:1.1.1.58]
DAQ1742_00616  uxaA; Altronate hydrolase [KO:K01685] [EC:4.2.1.7]
DAQ1742_00069  uxuA; Mannonate dehydratase [KO:K01686] [EC:4.2.1.8]
DAQ1742_00782  uxuB; D-mannonate oxidoreductase [KO:K00040] [EC:1.1.1.57]
DAQ1742_02929  ugd; UDP-glucose dehydrogenase [KO:K00012] [EC:1.1.1.22]
DAQ1742_02928  galF; UTP--glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
DAQ1742_02258  galU; UTP--glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
DAQ1742_04084  sgbH; 3-keto-L-gulonate 6-phosphate decarboxylase [KO:K03078] [EC:4.1.1.85]
DAQ1742_04091  sgbU; L-xylulose 5-phosphate 3-epimerase [KO:K03079] [EC:5.1.3.22]
DAQ1742_04085  ulaF; L-ribulose-5-phosphate 4-epimerase [KO:K03077] [EC:5.1.3.4]
DAQ1742_02704  araD; L-ribulose-5-phosphate 4-epimerase [KO:K03077] [EC:5.1.3.4]
DAQ1742_04123  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
DAQ1742_02203  araA; L-arabinose isomerase [KO:K01804] [EC:5.3.1.4]
DAQ1742_02202  araB; Ribulokinase [KO:K00853] [EC:2.7.1.16]
DAQ1742_00542  rhaB; Rhamnulokinase [KO:K00848] [EC:2.7.1.5]
DAQ1742_00540  rhaD; Rhamnulose-1-phosphate aldolase [KO:K01629] [EC:4.1.2.19]
Compound
C00022  Pyruvate
C00026  2-Oxoglutarate
C00029  UDP-glucose
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00116  Glycerol
C00167  UDP-glucuronate
C00181  D-Xylose
C00191  D-Glucuronate
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00216  D-Arabinose
C00231  D-Xylulose 5-phosphate
C00259  L-Arabinose
C00266  Glycolaldehyde
C00309  D-Ribulose
C00310  D-Xylulose
C00312  L-Xylulose
C00333  D-Galacturonate
C00379  Xylitol
C00433  2,5-Dioxopentanoate
C00470  Pectate
C00474  Ribitol
C00476  D-Lyxose
C00502  D-Xylonate
C00508  L-Ribulose
C00514  D-Mannonate
C00532  L-Arabitol
C00558  D-Tagaturonate
C00618  3-Dehydro-L-gulonate
C00714  Pectin
C00789  CDP-ribitol
C00800  L-Gulonate
C00817  D-Altronate
C00905  D-Fructuronate
C01068  D-Ribitol 5-phosphate
C01101  L-Ribulose 5-phosphate
C01508  L-Lyxose
C01904  D-Arabitol
C02266  D-Xylonolactone
C02273  Digalacturonate
C02426  L-Glyceraldehyde
C02753  D-Xylono-1,4-lactone
C03033  beta-D-Glucuronoside
C03291  L-Xylulose 5-phosphate
C03826  2-Dehydro-3-deoxy-D-xylonate
C04053  5-Dehydro-4-deoxy-D-glucuronate
C04349  (4S)-4,6-Dihydroxy-2,5-dioxohexanoate
C04575  (4R,5S)-4,5,6-Trihydroxy-2,3-dioxohexanoate
C05385  D-Glucuronate 1-phosphate
C05411  L-Xylonate
C05412  L-Lyxonate
C06118  4-(4-Deoxy-alpha-D-gluc-4-enuronosyl)-D-galacturonate
C06441  L-Xylulose 1-phosphate
C14899  3-Dehydro-L-gulonate 6-phosphate
C15930  L-Galactonate
C20680  2-Dehydro-3-deoxy-L-galactonate
C22337  D-Ribulose 1-phosphate
C22712  4-Deoxy-L-threo-hex-4-enopyranuronate
Reference
PMID:11741871
  Authors
Yew WS, Gerlt JA.
  Title
Utilization of L-ascorbate by Escherichia coli K-12: assignments of functions to products of the yjf-sga and yia-sgb operons.
  Journal
J Bacteriol 184:302-6 (2002)
DOI:10.1128/JB.184.1.302-306.2002
Reference
PMID:15697206
  Authors
Yew WS, Akana J, Wise EL, Rayment I, Gerlt JA
  Title
Evolution of enzymatic activities in the orotidine 5'-monophosphate decarboxylase suprafamily: enhancing the promiscuous D-arabino-hex-3-ulose 6-phosphate synthase reaction catalyzed by 3-keto-L-gulonate 6-phosphate decarboxylase.
  Journal
Biochemistry 44:1807-15 (2005)
DOI:10.1021/bi047815v
Reference
PMID:10572115
  Authors
Yasueda H, Kawahara Y, Sugimoto S.
  Title
Bacillus subtilis yckG and yckF encode two key enzymes of the ribulose monophosphate pathway used by methylotrophs, and yckH is required for their expression.
  Journal
J Bacteriol 181:7154-60 (1999)
DOI:10.1128/JB.181.23.7154-7160.1999
Reference
PMID:10913097
  Authors
Ibanez E, Gimenez R, Pedraza T, Baldoma L, Aguilar J, Badia J
  Title
Role of the yiaR and yiaS genes of Escherichia coli in metabolism of endogenously formed L-xylulose.
  Journal
J Bacteriol 182:4625-7 (2000)
DOI:10.1128/JB.182.16.4625-4627.2000
Reference
PMID:15901685
  Authors
Orita I, Yurimoto H, Hirai R, Kawarabayasi Y, Sakai Y, Kato N
  Title
The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway.
  Journal
J Bacteriol 187:3636-42 (2005)
DOI:10.1128/JB.187.11.3636-3642.2005
Related
pathway
daq00010  Glycolysis / Gluconeogenesis
daq00020  Citrate cycle (TCA cycle)
daq00030  Pentose phosphate pathway
daq00052  Galactose metabolism
daq00053  Ascorbate and aldarate metabolism
daq00500  Starch and sucrose metabolism
daq00520  Amino sugar and nucleotide sugar metabolism
daq00561  Glycerolipid metabolism
daq00562  Inositol phosphate metabolism
daq00740  Riboflavin metabolism
KO pathway
ko00040   
LinkDB

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